Factsheet for GSMUA_Achr11P07090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03240_001
GSMUA_Achr4P15230_001
GSMUA_Achr5P19940_001
GSMUA_Achr7P24520_001
GSMUA_Achr7P24530_001
GSMUA_Achr7P25140_001
GSMUA_Achr8P11170_001
GSMUA_Achr8P11720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	GSMUA_Achr10P...	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr10P...	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr1P03240_001	AT2G31260.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT2G45170.1	24249832
AT4G34660.1	GSMUA_Achr8P11170_001	AT2G45170.1	24249832
AT4G34660.1	GSMUA_Achr7P24520_001	AT3G61710.1	24249832
AT4G34660.1	GSMUA_Achr7P24530_001	AT3G61710.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr11P...	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr5P19940_001	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr8P11720_001	AT4G34660.1	24249832
AT4G34660.1	GSMUA_Achr4P15230_001	AT5G11550.1	21798944
AT4G34660.1	GSMUA_Achr7P25140_001	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g00460.t01	Wine grape	cytosol	75.34	75.74
Solyc01g110300.2.1	Tomato	nucleus	73.46	74.46
PGSC0003DMT400008049	Potato	mitochondrion	73.46	74.05
VIT_18s0001g13530.t01	Wine grape	cytosol	72.12	73.1
KRH51472	Soybean	cytosol	72.65	73.05
GSMUA_Achr5P19940_001	Banana	cytosol	72.65	73.05
KRH29359	Soybean	endoplasmic reticulum	72.39	72.78
GSMUA_Achr11P...	Banana	cytosol	71.85	72.24
KRH24385	Soybean	endoplasmic reticulum	71.05	71.43
GSMUA_Achr8P11720_001	Banana	cytosol	69.97	70.35
PGSC0003DMT400035686	Potato	cytosol	67.29	67.84
AT4G34660.1	Thale cress	mitochondrion	66.76	67.66
Solyc07g032110.2.1	Tomato	cytosol	67.02	67.57
Bra010715.1-P	Field mustard	cytosol	67.02	67.02
CDX75452	Canola	mitochondrion	65.68	66.4
Bra011550.1-P	Field mustard	mitochondrion	65.68	66.4
CDX69077	Canola	mitochondrion	65.42	66.12
CDY17473	Canola	mitochondrion	64.61	65.49
KRH60785	Soybean	endoplasmic reticulum	68.1	65.46
CDX76295	Canola	cytosol	64.34	65.4
Bra034642.1-P	Field mustard	cytosol	60.32	63.92
CDX90304	Canola	cytosol	66.76	59.0
CDY12115	Canola	cytosol	65.68	57.92
CDY12114	Canola	cytosol	17.96	56.3
GSMUA_Achr9P02630_001	Banana	mitochondrion	39.41	46.82
GSMUA_Achr9P02620_001	Banana	cytosol	6.17	43.4
GSMUA_Achr6P01240_001	Banana	cytosol	46.11	36.29
GSMUA_Achr6P29510_001	Banana	cytosol	39.95	29.04

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr11G07090_001	EnsemblPlants:GSMUA_Achr11P07090_001	EnsemblPlants:GSMUA_Achr11T07090_001	InterPro:IPR001452
InterPro:IPR027267	UniProt:M0RQ39	PFAM:PF14604	PRINTS:PR00499	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI000295D6F1	SEG:seg	:	:	:	:

Description

src homology-3 domain protein 3, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G07090_001]

Coordinates

chr11:-:5550253..5554626

Molecular Weight (calculated)

41714.5 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.457

Length

373 amino acids

Sequence
(BLAST)

001: MDAIRKQATK LREQVARQQQ AVLKQFGGGG YGISDNVITD EAELQQYRRI EQLYISTRSS KHFQRDIVRG VEGFIVTGSK QVEIGTKLSD DSRKYGVENS
101: CTSDHTLSKA ALIFSQARSH MEKERENLLK SLSSLVVEPL RAMVVGAQLE DARHLAQRYE KMRQEAEVQT IEVSKCQIKL REAPGYVDNS LKLEAAETKL
201: QELKSNMTVL GKEAIAAMAA VEAQQQRLTL QRLIAMIESE RSYHLKSLQI LDQLAGEASM VSKRQRIEAS PSSVLDEPVP PPQSYEEADG VYPSHTFDGL
301: TDSMGYFLGE VVHSYQAESD AELDLSVGDF VVVRKVSNNG WAEGECKGKA GWFPYGYVER RDRVLASKIA EVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.