CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95650
KRH04111
KRH19544
KRH24385
KRH28060
KRH29359
KRH30023
KRH32171
KRH51472
KRH52713
KRH57384
KRH60785
KRH62041
KRH62897
KRH67361
KRH77376

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	KRG95650	AT2G31260.1	24249832
AT4G34660.1	KRH19544	AT2G31260.1	24249832
AT4G34660.1	KRH32171	AT2G31260.1	24249832
AT4G34660.1	KRH67361	AT2G31260.1	24249832
AT4G34660.1	KRH04111	AT2G45170.1	24249832
AT4G34660.1	KRH28060	AT2G45170.1	24249832
AT4G34660.1	KRH57384	AT2G45170.1	24249832
AT4G34660.1	KRH77376	AT2G45170.1	24249832
AT4G34660.1	KRH30023	AT3G61710.1	24249832
AT4G34660.1	KRH62897	AT3G61710.1	24249832
AT4G34660.1	KRH24385	AT4G34660.1	24249832
AT4G34660.1	KRH29359	AT4G34660.1	24249832
AT4G34660.1	KRH51472	AT4G34660.1	24249832
AT4G34660.1	KRH60785	AT4G34660.1	24249832
AT4G34660.1	KRH52713	AT5G11550.1	21798944
AT4G34660.1	KRH62041	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024355_P001	Maize	cytosol	12.67	90.38
KRH60785	Soybean	endoplasmic reticulum	94.07	89.95
KRH29359	Soybean	endoplasmic reticulum	89.49	89.49
KRH24385	Soybean	endoplasmic reticulum	88.95	88.95
VIT_03s0038g00460.t01	Wine grape	cytosol	84.91	84.91
Solyc01g110300.2.1	Tomato	nucleus	83.02	83.7
PGSC0003DMT400008049	Potato	mitochondrion	83.29	83.51
AT4G34660.1	Thale cress	mitochondrion	79.78	80.43
Bra011550.1-P	Field mustard	mitochondrion	77.9	78.32
CDX69077	Canola	mitochondrion	77.9	78.32
CDX75452	Canola	mitochondrion	77.9	78.32
GSMUA_Achr5P19940_001	Banana	cytosol	77.63	77.63
GSMUA_Achr11P...	Banana	cytosol	77.63	77.63
Os10t0512700-01	Rice	plasma membrane	76.28	76.49
CDY17473	Canola	mitochondrion	75.74	76.36
CDX76295	Canola	cytosol	75.47	76.29
EER91379	Sorghum	cytosol	75.47	75.88
TraesCS1B01G202500.1	Wheat	cytosol	75.47	75.88
Bra034642.1-P	Field mustard	cytosol	71.97	75.85
TraesCS1D01G176200.1	Wheat	cytosol	75.2	75.61
TraesCS1A01G177700.1	Wheat	cytosol	75.2	75.61
Bra010715.1-P	Field mustard	cytosol	76.01	75.6
GSMUA_Achr8P11720_001	Banana	cytosol	74.93	74.93
Zm00001d013860_P012	Maize	cytosol	74.93	74.13
GSMUA_Achr11P...	Banana	cytosol	73.05	72.65
TraesCS2B01G406500.2	Wheat	cytosol	71.7	71.89
TraesCS2D01G386200.1	Wheat	cytosol	71.43	71.62
TraesCS2A01G388400.1	Wheat	cytosol	71.43	71.62
Zm00001d032465_P002	Maize	cytosol	75.47	71.61
OQU82036	Sorghum	cytosol	70.89	71.47
Os04t0539800-01	Rice	plasma membrane	70.89	71.27
Zm00001d002810_P001	Maize	plasma membrane	70.08	70.65
HORVU1Hr1G047180.11	Barley	cytosol	69.27	69.09
Zm00001d025955_P001	Maize	cytosol, mitochondrion	68.46	67.02
CDY12115	Canola	cytosol	76.28	66.9
CDX90304	Canola	cytosol	75.74	66.59
HORVU2Hr1G092430.1	Barley	cytosol	70.62	63.28
CDY12114	Canola	cytosol	20.22	63.03
KRH42945	Soybean	endoplasmic reticulum	52.83	56.32
KRH59070	Soybean	cytosol	53.1	55.34
KRH76411	Soybean	cytosol	47.71	48.9
KRH39714	Soybean	cytosol	46.63	47.79

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100783004	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	EMBL:ACUP02003376	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_06G008900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1K731
InterPro:IPR001452	InterPro:IPR027267	EnsemblPlants:KRH51472	ProteinID:KRH51472	ProteinID:KRH51472.1	PFAM:PF14604
PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326
SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI00023398C0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:684301..690846

Molecular Weight (calculated)

41203.0 Da

IEP (calculated)

7.149

GRAVY (calculated)

-0.547

Length

371 amino acids

Sequence
(BLAST)

001: MEAIRKQASK LREQVARQQQ AVLKQFGAGG YGGSDNMVTD EVELQQHQKL EKLYISTRAG KHYQRDIVRG VEGYIVTGSK QVEIGTKLSE DSRKYGADNT
101: CTSGSTLSRA ALNYARARAQ MEKERGSLLK ALGTQVAEPL RAMVMGAPLE DARHLAQRYD RMRQEAEAQA IEVSKRQAKV RETPGNAENA MKLEAAETKL
201: QDLKTNMAIL GKEAAAAMAA VEAQQQRLTL QRLIAMVEAE RAYHQRVLQI LDQLEGEMIS ERQRIEAPPT PSVDSSMTPP PSYEEVNGVY ASQAHNGSTD
301: SMGYFLGEVL FPYHAESEVE LNLSVGDYIV IRKVTNNGWA EGECKGKAGW FPFGYIERRE RVLASKVAEV F

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.