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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 27341663
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d002810_P001
Zm00001d009530_P001
Zm00001d011984_P001
Zm00001d013860_P012
Zm00001d024355_P001
Zm00001d025955_P001
Zm00001d028417_P001
Zm00001d032465_P002
Zm00001d038979_P001
Zm00001d042303_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G34660.1 Zm00001d028417_P001 AT2G31260.1 24249832
AT4G34660.1 Zm00001d011984_P001 AT3G61710.1 24249832
AT4G34660.1 Zm00001d042303_P001 AT3G61710.1 24249832
AT4G34660.1 Zm00001d002810_P001 AT4G34660.1 24249832
AT4G34660.1 Zm00001d013860_P012 AT4G34660.1 24249832
AT4G34660.1 Zm00001d024355_P001 AT4G34660.1 24249832
AT4G34660.1 Zm00001d025955_P001 AT4G34660.1 24249832
AT4G34660.1 Zm00001d032465_P002 AT4G34660.1 24249832
AT4G34660.1 Zm00001d009530_P001 AT5G11550.1 21798944
AT4G34660.1 Zm00001d038979_P001 AT5G11550.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU82036 Sorghum cytosol 95.38 95.38
Zm00001d025955_P001 Maize cytosol, mitochondrion 91.03 88.39
TraesCS2A01G388400.1 Wheat cytosol 87.5 87.03
TraesCS2D01G386200.1 Wheat cytosol 87.23 86.76
TraesCS2B01G406500.2 Wheat cytosol 87.23 86.76
Os04t0539800-01 Rice plasma membrane 86.96 86.72
Zm00001d024355_P001 Maize cytosol 11.96 84.62
HORVU2Hr1G092430.1 Barley cytosol 86.41 76.81
GSMUA_Achr5P19940_001 Banana cytosol 72.01 71.43
GSMUA_Achr11P... Banana cytosol 71.74 71.16
VIT_03s0038g00460.t01 Wine grape cytosol 71.2 70.62
KRH51472 Soybean cytosol 70.65 70.08
Zm00001d013860_P012 Maize cytosol 70.65 69.33
GSMUA_Achr8P11720_001 Banana cytosol 69.84 69.27
KRH29359 Soybean endoplasmic reticulum 69.57 69.0
Solyc01g110300.2.1 Tomato nucleus 68.75 68.75
VIT_18s0001g13530.t01 Wine grape cytosol 68.75 68.75
PGSC0003DMT400008049 Potato mitochondrion 68.75 68.38
KRH24385 Soybean endoplasmic reticulum 68.21 67.66
AT4G34660.1 Thale cress mitochondrion 66.58 66.58
CDX75452 Canola mitochondrion 66.58 66.4
CDX69077 Canola mitochondrion 66.58 66.4
Bra011550.1-P Field mustard mitochondrion 66.58 66.4
Zm00001d032465_P002 Maize cytosol 70.38 66.24
CDY17473 Canola mitochondrion 65.22 65.22
CDX76295 Canola cytosol 64.67 64.85
Bra034642.1-P Field mustard cytosol 61.96 64.77
KRH60785 Soybean endoplasmic reticulum 67.39 63.92
Solyc07g032110.2.1 Tomato cytosol 63.59 63.24
PGSC0003DMT400035686 Potato cytosol 63.04 62.7
Bra010715.1-P Field mustard cytosol 63.32 62.47
CDY12114 Canola cytosol 19.29 59.66
Zm00001d042379_P001 Maize peroxisome 17.39 56.64
CDY12115 Canola cytosol 63.59 55.32
CDX90304 Canola cytosol 63.32 55.21
Zm00001d006152_P001 Maize nucleus 19.29 47.97
Zm00001d006461_P001 Maize mitochondrion 45.11 47.7
Zm00001d008747_P001 Maize nucleus 21.74 47.34
Zm00001d028558_P003 Maize cytosol 42.66 39.75
Zm00001d022555_P001 Maize cytosol, mitochondrion 32.88 29.66
Zm00001d022556_P001 Maize cytosol 29.35 28.95
Protein Annotations
Gene3D:1.20.1270.60EntrezGene:100273976Gene3D:2.30.30.40MapMan:22.5.4.1.4InterPro:AH/BAR_dom_sfUniProt:B4FYF0
EMBL:BT042138ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001452
InterPro:IPR027267ProteinID:ONM15395.1PFAM:PF00018PFscan:PS50002PANTHER:PTHR44109PANTHER:PTHR44109:SF2
InterPro:SH3-like_dom_sfInterPro:SH3_domainSMART:SM00326SUPFAM:SSF103657SUPFAM:SSF50044UniParc:UPI00017B7B1E
EnsemblPlantsGene:Zm00001d002810EnsemblPlants:Zm00001d002810_P001EnsemblPlants:Zm00001d002810_T001SEG:seg::
Description
SH3 domain-containing protein 2
Coordinates
chr2:+:23325349..23329634
Molecular Weight (calculated)
41080.5 Da
IEP (calculated)
5.788
GRAVY (calculated)
-0.561
Length
368 amino acids
Sequence
(BLAST)
001: MEALWKQASR LKDQVSRQGV FKQFGYGNSD NAFTDESEVK LHQRLEKLYL STRAAKHFQR DIVRGVEGYI VTGSKQVEIG NKLSDDSQKY GVGNTCTSGD
101: TLSKAATYFG KARSQMEKER GNMLKAFGTQ VAEPLRAMVM GAPLEDARHM AQRYDRTRQE AEAQAVEVSR RQNRVRESTG NGDMVSKLEA AEYKLEELKS
201: NMVGLGKEAI AAMSAVEAQQ QRLTLQRLIA LVEAERTYHQ RVLEILDKLE EEMVSERQKI EAPPTPAAEN YIPPPAPPSY DEINGAFAST SVNESVQSVD
301: FFLGEALDSF NAESEFELTL SAGDIVIVRK ISSNGWAEGE CKGKAGWFPH AYIERQERVL ASKVPHIF
Best Arabidopsis Sequence Match ( AT1G31440.1 )
(BLAST)
001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ
Arabidopsis Description
SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.