Factsheet for Zm00001d028558_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92866	Sorghum	cytosol	78.73	81.84
Os03t0266700-01	Rice	plasma membrane	73.67	73.86
TraesCS4B01G211900.1	Wheat	cytosol	66.33	68.77
TraesCS4D01G212700.1	Wheat	cytosol	66.33	67.88
TraesCS4A01G092400.1	Wheat	cytosol	66.08	67.62
Zm00001d024355_P001	Maize	cytosol	7.59	57.69
HORVU4Hr1G060770.2	Barley	cytosol	60.0	56.56
VIT_02s0087g00190.t01	Wine grape	cytosol	48.86	52.02
KRH76411	Soybean	cytosol	45.57	49.72
KRH39714	Soybean	cytosol	44.56	48.62
PGSC0003DMT400077295	Potato	cytosol	43.8	47.79
Solyc08g074780.2.1	Tomato	cytosol	43.8	47.79
GSMUA_Achr6P01240_001	Banana	cytosol	56.46	47.05
Zm00001d002810_P001	Maize	plasma membrane	39.75	42.66
Zm00001d013860_P012	Maize	cytosol	39.49	41.6
CDY12418	Canola	cytosol	45.57	41.57
Bra038424.1-P	Field mustard	cytosol	45.32	41.34
CDY27149	Canola	cytosol	45.32	41.34
AT1G31440.1	Thale cress	cytosol	45.32	40.77
Zm00001d032465_P002	Maize	cytosol	38.99	39.39
Zm00001d025955_P001	Maize	cytosol, mitochondrion	37.47	39.05
Zm00001d006152_P001	Maize	nucleus	14.43	38.51
Zm00001d008747_P001	Maize	nucleus	16.2	37.87
Zm00001d006461_P001	Maize	mitochondrion	33.16	37.64
Zm00001d042379_P001	Maize	peroxisome	10.13	35.4
Zm00001d022556_P001	Maize	cytosol	23.29	24.66
Zm00001d022555_P001	Maize	cytosol, mitochondrion	25.32	24.51
CDY12310	Canola	nucleus	11.65	20.63

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:35.1	UniProt:A0A1D6JXF7	InterPro:AH/BAR_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	ProteinID:ONL96368.1
PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF1	InterPro:SH3-like_dom_sf	InterPro:SH3_domain
SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI000844A0AA	EnsemblPlantsGene:Zm00001d028558	EnsemblPlants:Zm00001d028558_P003
EnsemblPlants:Zm00001d028558_T003	SEG:seg	:	:	:	:

Description

Clathrin binding protein

Coordinates

chr1:+:39099230..39105322

Molecular Weight (calculated)

44236.0 Da

IEP (calculated)

5.043

GRAVY (calculated)

-0.508

Length

395 amino acids

Sequence
(BLAST)

001: MTQAVLKQFS TRYSQDPSLV DEAELECHQN LQRLYSTTRA AKHFQRNIVR GVEGFIAVST KQMEIVKKLA GDCCKYGDDN QHFGFALARA SEEFGKSHKQ
101: IEKEREDLLK ILGEQIFEPL REMIMSAPLE DARLLTYRYQ RIRQDMESQI ADVMRKQLKS KESSGNTDNS VKLQHAESKL SDLRTTLAAL GREATAAMEA
201: VEAQQQQVTY ERLLAMTNSS SIAICCCVLQ ICIIFLHEEL DGFSLCLQVD AERTYHQNAA DILNKLHDEM LYAKHHNESA NHYDEQSSEP ESDAGPAQVH
301: SRSTSEDPVL TKPSESTGNS QEVQFLGEVI HPFDAQADGE LSLAVGEYVV VRQVAANGWS EGECKGKAGW FPSAYVEQRD RAPASKVIEP GLLTT

Best Arabidopsis Sequence Match ( AT1G31440.1 )
(BLAST)

001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ

Arabidopsis Description

SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.