CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028558_P003	Maize	cytosol	81.84	78.73
TraesCS4B01G211900.1	Wheat	cytosol	78.42	78.22
Os03t0266700-01	Rice	plasma membrane	80.79	77.92
TraesCS4D01G212700.1	Wheat	cytosol	77.63	76.42
TraesCS4A01G092400.1	Wheat	cytosol	77.37	76.17
HORVU4Hr1G060770.2	Barley	cytosol	70.79	64.2
VIT_02s0087g00190.t01	Wine grape	cytosol	55.0	56.33
Solyc08g074780.2.1	Tomato	cytosol	50.79	53.31
PGSC0003DMT400077295	Potato	cytosol	50.79	53.31
KRH76411	Soybean	cytosol	49.47	51.93
KRH39714	Soybean	cytosol	48.68	51.1
GSMUA_Achr6P01240_001	Banana	cytosol	62.63	50.21
EER91379	Sorghum	cytosol	45.0	46.34
CDY27149	Canola	cytosol	52.11	45.73
Bra038424.1-P	Field mustard	cytosol	52.11	45.73
OQU82036	Sorghum	cytosol	44.21	45.65
CDY12418	Canola	cytosol	51.84	45.5
AT1G31440.1	Thale cress	cytosol	50.79	43.96
EER99434	Sorghum	cytosol	40.0	43.68
CDY12310	Canola	nucleus	13.16	22.42

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:35.1	InterPro:AH/BAR_dom_sf	InterPro:BAR_dom	UniProt:C5WQ41
ncoils:Coil	ProteinID:EER95122.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR001452	InterPro:IPR004148	InterPro:IPR027267
EnsemblPlants:OQU92866	ProteinID:OQU92866	ProteinID:OQU92866.1	PFAM:PF03114	PFAM:PF14604	PFscan:PS50002
PANTHER:PTHR44109	PANTHER:PTHR44109:SF1	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	EnsemblPlantsGene:SORBI_3001G425800
SUPFAM:SSF103657	SUPFAM:SSF50044	unigene:Sbi.13597	UniParc:UPI0001A831A5	RefSeq:XP_002468124.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:70551947..70557834

Molecular Weight (calculated)

42735.0 Da

IEP (calculated)

5.754

GRAVY (calculated)

-0.712

Length

380 amino acids

Sequence
(BLAST)

001: MEALKKQASK LREHVAKQQQ AVLKQFSARY NQDPSLVDEA ELECHQNLQR LYSTTRAAKH FQRNIVRGVE GFIAISTKQM EIVKKLAEDC CKYGNDNQHF
101: GFALARASEE FGKSHKQIEK EREDLLKSLG EQVFEPLREM IMSAPLEDAR LLTYRYQRIR QDMESQIADV MRKQLKSKES SGNTDNSVKL QHAESKLSDL
201: RTTLAALGRE ATAAMEAVEA QQQQVTYERL LAMVDAERTY HQNAADILNK LHDEMLYAKH HNESANHYDE QSSEPESDTG PAQVHSHSTS EDPVLTKPSE
301: STGNSQEVQF LGEVIHPFDA QADGELSLAV GEYVVVRQVA ANGWSEGECK GKAGWFPSAY VEQRDKAPAS KVIEPGLLTT

Best Arabidopsis Sequence Match ( AT1G31440.1 )
(BLAST)

001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ

Arabidopsis Description

SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.