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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY12418 Canola cytosol 87.02 88.22
Bra038424.1-P Field mustard cytosol 81.78 82.91
CDY27149 Canola cytosol 81.78 82.91
VIT_02s0087g00190.t01 Wine grape cytosol 48.75 57.68
KRH76411 Soybean cytosol 46.01 55.8
KRH39714 Soybean cytosol 45.56 55.25
PGSC0003DMT400077295 Potato cytosol 45.33 54.97
Solyc08g074780.2.1 Tomato cytosol 44.65 54.14
OQU92866 Sorghum cytosol 43.96 50.79
TraesCS4D01G212700.1 Wheat cytosol 42.6 48.45
TraesCS4A01G092400.1 Wheat cytosol 42.6 48.45
TraesCS4B01G211900.1 Wheat cytosol 41.91 48.29
Os03t0266700-01 Rice plasma membrane 43.28 48.22
AT4G34660.1 Thale cress mitochondrion 39.18 46.74
Zm00001d028558_P003 Maize cytosol 40.77 45.32
AT4G18060.1 Thale cress cytosol, mitochondrion 33.49 41.88
GSMUA_Achr6P01240_001 Banana cytosol 44.19 40.93
HORVU4Hr1G060770.2 Barley cytosol 37.81 39.62
AT4G39020.1 Thale cress cytosol 10.25 26.63
Protein Annotations
Gene3D:1.20.1270.60Gene3D:2.30.30.40MapMan:35.1EntrezGene:840034ProteinID:AAG51264.1ProteinID:AEE31356.1
EMBL:AF367773InterPro:AH/BAR_dom_sfArrayExpress:AT1G31440EnsemblPlantsGene:AT1G31440RefSeq:AT1G31440TAIR:AT1G31440
RefSeq:AT1G31440-TAIR-GEnsemblPlants:AT1G31440.1TAIR:AT1G31440.1EMBL:AY080835EMBL:AY113984Unigene:At.27356
ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005794GO:GO:0005886GO:GO:0016020
GO:GO:0030136GO:GO:0031410InterPro:IPR001452InterPro:IPR027267RefSeq:NP_174429.1PFAM:PF14604
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281
PFscan:PS50002PANTHER:PTHR44109PANTHER:PTHR44109:SF1UniProt:Q9C865InterPro:SH3-like_dom_sfInterPro:SH3_domain
SMART:SM00326SUPFAM:SSF103657SUPFAM:SSF50044UniParc:UPI00000A74BASEG:seg:
Description
SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
Coordinates
chr1:-:11255836..11258814
Molecular Weight (calculated)
49260.8 Da
IEP (calculated)
6.625
GRAVY (calculated)
-0.831
Length
439 amino acids
Sequence
(BLAST)
001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.