CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39714	Soybean	cytosol	95.58	95.58
VIT_02s0087g00190.t01	Wine grape	cytosol	67.13	65.5
Solyc08g074780.2.1	Tomato	cytosol	57.46	57.46
PGSC0003DMT400077295	Potato	cytosol	56.91	56.91
TraesCS4B01G211900.1	Wheat	cytosol	52.21	49.61
OQU92866	Sorghum	cytosol	51.93	49.47
TraesCS4D01G212700.1	Wheat	cytosol	52.49	49.22
TraesCS4A01G092400.1	Wheat	cytosol	52.49	49.22
Os03t0266700-01	Rice	plasma membrane	53.31	48.98
KRH51472	Soybean	cytosol	48.9	47.71
Bra038424.1-P	Field mustard	cytosol	56.35	47.11
CDY27149	Canola	cytosol	56.35	47.11
KRH29359	Soybean	endoplasmic reticulum	48.07	46.9
KRH24385	Soybean	endoplasmic reticulum	48.07	46.9
CDY12418	Canola	cytosol	55.52	46.42
AT1G31440.1	Thale cress	cytosol	55.8	46.01
Zm00001d028558_P003	Maize	cytosol	49.72	45.57
KRH42945	Soybean	endoplasmic reticulum	42.82	44.54
KRH59070	Soybean	cytosol	41.99	42.7
GSMUA_Achr6P01240_001	Banana	cytosol	54.42	41.56
KRH60785	Soybean	endoplasmic reticulum	44.48	41.49
HORVU4Hr1G060770.2	Barley	cytosol	47.51	41.05
CDY12310	Canola	nucleus	14.09	22.87

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100816554	Gene3D:2.30.30.40	MapMan:35.1	EMBL:ACUP02000611	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_01G150800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1J846
InterPro:IPR001452	InterPro:IPR027267	EnsemblPlants:KRH76411	ProteinID:KRH76411	ProteinID:KRH76411.1	PFAM:PF14604
PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF1	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326
SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI00023BD9C6	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:48778745..48783299

Molecular Weight (calculated)

40902.4 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.608

Length

362 amino acids

Sequence
(BLAST)

001: MDAIRKQASK LREQVARQQQ AILRQLGQIS NEPLMTDESE IECLQQLQKL YTSTKTAKHF QRHIVRAIEG FISVSSKQME IVRRMARDCC KYGTENLGSS
101: YPLARASLQF GNTYDTMENE RETLLGILGD QISEPLRAQI TGAPLEDARH LTHRYDKLHQ EVEAQAAEVL RRRSKLRNSS VSAESAVRLQ NAETRLKELK
201: SALAALGREA TAAMLSVEEQ QQQMTLQSLR TMVDAERSYH QHVLVILEKL YTEIIEERQP KEATSFPLPK DGYNQPADEN ANSNGIDYKH NSQTGTYFFA
301: KVIHPFDAQA EGELSLSVDD FVVVRQVGPN GWSEGECKGN AGWFPSAYVQ RQDMIPASKI TE

Best Arabidopsis Sequence Match ( AT1G31440.1 )
(BLAST)

001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ

Arabidopsis Description

SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.