CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95650
KRH04111
KRH19544
KRH24385
KRH28060
KRH29359
KRH30023
KRH32171
KRH51472
KRH52713
KRH57384
KRH60785
KRH62041
KRH62897
KRH67361
KRH77376

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	KRG95650	AT2G31260.1	24249832
AT4G34660.1	KRH19544	AT2G31260.1	24249832
AT4G34660.1	KRH32171	AT2G31260.1	24249832
AT4G34660.1	KRH67361	AT2G31260.1	24249832
AT4G34660.1	KRH04111	AT2G45170.1	24249832
AT4G34660.1	KRH28060	AT2G45170.1	24249832
AT4G34660.1	KRH57384	AT2G45170.1	24249832
AT4G34660.1	KRH77376	AT2G45170.1	24249832
AT4G34660.1	KRH30023	AT3G61710.1	24249832
AT4G34660.1	KRH62897	AT3G61710.1	24249832
AT4G34660.1	KRH24385	AT4G34660.1	24249832
AT4G34660.1	KRH29359	AT4G34660.1	24249832
AT4G34660.1	KRH51472	AT4G34660.1	24249832
AT4G34660.1	KRH60785	AT4G34660.1	24249832
AT4G34660.1	KRH52713	AT5G11550.1	21798944
AT4G34660.1	KRH62041	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24385	Soybean	endoplasmic reticulum	95.69	95.69
KRH51472	Soybean	cytosol	89.49	89.49
Zm00001d024355_P001	Maize	cytosol	12.4	88.46
VIT_03s0038g00460.t01	Wine grape	cytosol	81.67	81.67
KRH60785	Soybean	endoplasmic reticulum	84.91	81.19
Solyc01g110300.2.1	Tomato	nucleus	79.25	79.89
AT4G34660.1	Thale cress	mitochondrion	79.25	79.89
PGSC0003DMT400008049	Potato	mitochondrion	78.98	79.19
CDX69077	Canola	mitochondrion	77.9	78.32
CDX75452	Canola	mitochondrion	77.9	78.32
Bra011550.1-P	Field mustard	mitochondrion	77.9	78.32
GSMUA_Achr11P...	Banana	cytosol	76.82	76.82
CDY17473	Canola	mitochondrion	76.01	76.63
CDX76295	Canola	cytosol	75.47	76.29
GSMUA_Achr5P19940_001	Banana	cytosol	75.74	75.74
Bra034642.1-P	Field mustard	cytosol	71.7	75.57
Bra010715.1-P	Field mustard	cytosol	75.74	75.34
TraesCS1A01G177700.1	Wheat	cytosol	73.85	74.25
TraesCS1B01G202500.1	Wheat	cytosol	73.58	73.98
GSMUA_Achr8P11720_001	Banana	cytosol	73.85	73.85
Os10t0512700-01	Rice	plasma membrane	73.58	73.78
TraesCS1D01G176200.1	Wheat	cytosol	73.32	73.71
EER91379	Sorghum	cytosol	73.05	73.44
GSMUA_Achr11P...	Banana	cytosol	72.78	72.39
Zm00001d013860_P012	Maize	cytosol	72.78	72.0
OQU82036	Sorghum	cytosol	69.81	70.38
TraesCS2B01G406500.2	Wheat	cytosol	70.08	70.27
TraesCS2D01G386200.1	Wheat	cytosol	69.81	70.0
TraesCS2A01G388400.1	Wheat	cytosol	69.81	70.0
Zm00001d032465_P002	Maize	cytosol	73.58	69.82
Os04t0539800-01	Rice	plasma membrane	69.27	69.65
Zm00001d002810_P001	Maize	plasma membrane	69.0	69.57
HORVU1Hr1G047180.11	Barley	cytosol	67.66	67.47
Zm00001d025955_P001	Maize	cytosol, mitochondrion	67.92	66.49
CDY12115	Canola	cytosol	75.74	66.43
CDX90304	Canola	cytosol	75.47	66.35
HORVU2Hr1G092430.1	Barley	cytosol	69.54	62.32
CDY12114	Canola	cytosol	19.95	62.18
KRH42945	Soybean	endoplasmic reticulum	53.64	57.18
KRH59070	Soybean	cytosol	53.91	56.18
KRH76411	Soybean	cytosol	46.9	48.07
KRH39714	Soybean	cytosol	46.36	47.51

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100777051	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	EMBL:ACUP02006798	InterPro:AH/BAR_dom_sf
ncoils:Coil	EnsemblPlantsGene:GLYMA_11G111900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LJ75
InterPro:IPR001452	InterPro:IPR027267	EnsemblPlants:KRH29359	ProteinID:KRH29359	ProteinID:KRH29359.1	PFAM:PF14604
PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326
SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI000233CCA6	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:8529090..8532670

Molecular Weight (calculated)

40956.7 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.458

Length

371 amino acids

Sequence
(BLAST)

001: MDAIRKQASK LREQVARQQQ AVLKQFGGGG YGGSDNVVTD GVELQLHQRL EKLYISTRAG KHYQRDIVRG VEGYIVTGSK QVEIGTKLSE DSRKYGAENT
101: CTSGNTLSRA ALSFAQAHAQ IEKERGNLLK ALGTQVAEPL RAMVVGAPLE DARHLAQRYD RMRQEAEAQA IEVSKRQAKV REMPPNGENA MKLEAAEAKL
201: QDLKTNMTIL GKEAAAALAA VEAQQQRLTL QRLIAMVEAE RSYHQIVLQI LDQLEGEVTS ERQRIETPTT PSLDNSMPPP PSYEEVNGVF ASQAHNGSTD
301: SMGYFLGEVL FPYSAVSEVE LNLSVGDYVV VRKVTNSGWA EGECKGRAGW FPFSYIERRE RVLASKVAEV F

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.