CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90304	Canola	cytosol	95.04	95.26
Zm00001d024355_P001	Maize	cytosol	9.93	80.77
KRH51472	Soybean	cytosol	66.9	76.28
KRH29359	Soybean	endoplasmic reticulum	66.43	75.74
KRH24385	Soybean	endoplasmic reticulum	66.19	75.47
CDY12114	Canola	cytosol	20.8	73.95
VIT_03s0038g00460.t01	Wine grape	cytosol	63.83	72.78
Solyc01g110300.2.1	Tomato	nucleus	62.17	71.47
PGSC0003DMT400008049	Potato	mitochondrion	62.41	71.35
CDX75452	Canola	mitochondrion	61.94	71.0
CDX69077	Canola	mitochondrion	61.94	71.0
CDX76295	Canola	cytosol	60.76	70.03
CDY17473	Canola	mitochondrion	60.76	69.84
GSMUA_Achr11P...	Banana	cytosol	60.76	69.27
KRH60785	Soybean	endoplasmic reticulum	62.17	67.78
GSMUA_Achr5P19940_001	Banana	cytosol	58.63	66.85
GSMUA_Achr8P11720_001	Banana	cytosol	58.63	66.85
EER91379	Sorghum	cytosol	57.68	66.12
GSMUA_Achr11P...	Banana	cytosol	57.92	65.68
TraesCS1A01G177700.1	Wheat	cytosol	57.21	65.58
Os10t0512700-01	Rice	plasma membrane	57.21	65.41
TraesCS1B01G202500.1	Wheat	cytosol	56.97	65.31
TraesCS1D01G176200.1	Wheat	cytosol	56.74	65.04
Zm00001d013860_P012	Maize	cytosol	57.45	64.8
TraesCS2B01G406500.2	Wheat	cytosol	55.79	63.78
OQU82036	Sorghum	cytosol	55.32	63.59
Zm00001d002810_P001	Maize	plasma membrane	55.32	63.59
TraesCS2A01G388400.1	Wheat	cytosol	55.56	63.51
TraesCS2D01G386200.1	Wheat	cytosol	55.56	63.51
Zm00001d032465_P002	Maize	cytosol	57.45	62.15
Os04t0539800-01	Rice	plasma membrane	52.96	60.7
Zm00001d025955_P001	Maize	cytosol, mitochondrion	54.14	60.42
HORVU1Hr1G047180.11	Barley	cytosol	52.48	59.68
HORVU2Hr1G092430.1	Barley	cytosol	55.08	56.28
CDY01515	Canola	cytosol, mitochondrion	43.03	51.85
CDX90424	Canola	mitochondrion	42.79	51.57
CDY27149	Canola	cytosol	41.13	40.18
CDY12418	Canola	cytosol	40.43	39.49
CDY12310	Canola	nucleus	12.53	23.77

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	UniProt:A0A078FCM0	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDY12115
ProteinID:CDY12115	ProteinID:CDY12115.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00061103001	InterPro:IPR001452	InterPro:IPR027267	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI0004EF0D94	SEG:seg	:	:	:	:

Description

BnaC03g60310DBnaC03g60310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCM0]

Coordinates

chrLK032017:+:655427..657769

Molecular Weight (calculated)

47117.9 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.508

Length

423 amino acids

Sequence
(BLAST)

001: MEAIRKQASK LREQVARQQQ AVLRQFGGGG YGGSDTVITD EEELHRHQKL EKLYISTRSA KHFQRDIVRG VEGSIVTGSK QVEIGTKLCE DSRRYGSGNT
101: CTSGNTLTRA SLSFANARDQ MEKERGTLLK ALGTQVAEPL RAMVTGAPLV DARHLAQRYE RMRQETESQT IEVSKRQAKV KENPGNPELV MKLEYAEAKL
201: QDLKSNMTVL GKEAASAMAA VEDQQQTQTL QRLITLVEAE RIYHQRILEI IERLEGEMRV EQQRIEGPQT PQVDNITSSP PPPSYEEASN GVNASHMHNG
301: TSDAIGYFLG EVLFPYQSDS EFELSLSVGE YVVIREVTSS GWAEGECKGK AGWFPFDYIE RRDRVLAAKV IELIVPFIVS SLQSVRDNCD PNRTSSLSLT
401: ASIISFPNAP LKSSLVVEKL RRA

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.