CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67858
CDX69077
CDX69749
CDX75452
CDX76295
CDX78430
CDX83397
CDX85708
CDX91209
CDX95634
CDY10782
CDY15410
CDY17473
CDY19070
CDY24745
CDY25058
CDY25070
CDY37030
CDY56249
CDY68531
CDY70494

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	CDY10782	AT2G31260.1	24249832
AT4G34660.1	CDY15410	AT2G31260.1	24249832
AT4G34660.1	CDY19070	AT2G31260.1	24249832
AT4G34660.1	CDY24745	AT2G31260.1	24249832
AT4G34660.1	CDX83397	AT2G45170.1	24249832
AT4G34660.1	CDX95634	AT2G45170.1	24249832
AT4G34660.1	CDY37030	AT2G45170.1	24249832
AT4G34660.1	CDY56249	AT2G45170.1	24249832
AT4G34660.1	CDX67858	AT3G61710.1	24249832
AT4G34660.1	CDY25058	AT3G61710.1	24249832
AT4G34660.1	CDY25070	AT3G61710.1	24249832
AT4G34660.1	CDY70494	AT3G61710.1	24249832
AT4G34660.1	CDX69077	AT4G34660.1	24249832
AT4G34660.1	CDX75452	AT4G34660.1	24249832
AT4G34660.1	CDX76295	AT4G34660.1	24249832
AT4G34660.1	CDY17473	AT4G34660.1	24249832
AT4G34660.1	CDX69749	AT5G11550.1	21798944
AT4G34660.1	CDX78430	AT5G11550.1	21798944
AT4G34660.1	CDX85708	AT5G11550.1	21798944
AT4G34660.1	CDX91209	AT5G11550.1	21798944
AT4G34660.1	CDY68531	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011550.1-P	Field mustard	mitochondrion	99.73	99.73
CDX75452	Canola	mitochondrion	99.73	99.73
AT4G34660.1	Thale cress	mitochondrion	93.77	94.02
CDY17473	Canola	mitochondrion	90.79	91.03
CDX76295	Canola	cytosol	90.51	91.01
Zm00001d024355_P001	Maize	cytosol	12.47	88.46
KRH51472	Soybean	cytosol	78.32	77.9
KRH29359	Soybean	endoplasmic reticulum	78.32	77.9
KRH24385	Soybean	endoplasmic reticulum	78.05	77.63
Solyc01g110300.2.1	Tomato	nucleus	75.61	75.82
PGSC0003DMT400008049	Potato	mitochondrion	75.61	75.41
VIT_03s0038g00460.t01	Wine grape	cytosol	74.53	74.12
GSMUA_Achr5P19940_001	Banana	cytosol	73.71	73.32
GSMUA_Achr11P...	Banana	cytosol	73.44	73.05
GSMUA_Achr8P11720_001	Banana	cytosol	71.27	70.89
KRH60785	Soybean	endoplasmic reticulum	73.71	70.1
EER91379	Sorghum	cytosol	68.83	68.83
Os10t0512700-01	Rice	plasma membrane	68.83	68.65
TraesCS1A01G177700.1	Wheat	cytosol	68.02	68.02
TraesCS1B01G202500.1	Wheat	cytosol	67.75	67.75
TraesCS2B01G406500.2	Wheat	cytosol	67.75	67.57
TraesCS1D01G176200.1	Wheat	cytosol	67.48	67.48
OQU82036	Sorghum	cytosol	67.21	67.39
TraesCS2D01G386200.1	Wheat	cytosol	67.48	67.3
Os04t0539800-01	Rice	plasma membrane	67.21	67.21
Zm00001d013860_P012	Maize	cytosol	68.29	67.2
TraesCS2A01G388400.1	Wheat	cytosol	67.21	67.03
Zm00001d002810_P001	Maize	plasma membrane	66.4	66.58
GSMUA_Achr11P...	Banana	cytosol	66.12	65.42
Zm00001d032465_P002	Maize	cytosol	69.11	65.22
CDY12114	Canola	cytosol	20.6	63.87
Zm00001d025955_P001	Maize	cytosol, mitochondrion	65.58	63.85
CDY12115	Canola	cytosol	71.0	61.94
HORVU1Hr1G047180.11	Barley	cytosol	62.33	61.83
CDX90304	Canola	cytosol	70.46	61.61
HORVU2Hr1G092430.1	Barley	cytosol	67.21	59.9
CDX90424	Canola	mitochondrion	48.78	51.28
CDY01515	Canola	cytosol, mitochondrion	48.51	51.0
CDY27149	Canola	cytosol	46.07	39.26
CDY12418	Canola	cytosol	45.8	39.03
CDY12310	Canola	nucleus	13.28	21.97

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	EnsemblPlants:CDX69077	ProteinID:CDX69077
ProteinID:CDX69077.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00130852001
InterPro:IPR001452	InterPro:IPR027267	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4
InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI0004EE5185
SEG:seg	:	:	:	:	:

Description

BnaC01g03760D

Coordinates

chrLK031789:-:2799258..2802311

Molecular Weight (calculated)

41177.7 Da

IEP (calculated)

7.083

GRAVY (calculated)

-0.644

Length

369 amino acids

Sequence
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG HGSGLSDNAE LHQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALS YGRARAQMEK ERGNMLKALG TQVAEPLRAM VMGAPLEDAR HLAQRYDRIR QEAEAQATEV ARRQAKARES QGHPDILTKL ESAEAKLQDL
201: KANMTTLGKE AASALSSVED QQQKLTLERL ISMVEFERAY HQRVLQILDQ LEGEMVSERQ RIEAPTTPSS NADNMPPPPS YEEANGVFAS HMHDTSTDSM
301: GYFLGEVLFP YHGVTDVELS LTAGEYVVVR KVTGNGWAEG ECKGKAGWFP YEYIERRERV LASKVSEVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.