CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 3
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90104
CDY03940
CDY35117
CDY40034
CDY60275
CDY67977

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31260.1	CDY35117	AT1G16790.1	21798944
AT2G31260.1	CDY40034	AT1G16790.1	21798944
AT2G31260.1	CDX90104	AT1G27700.1	21798944
AT2G31260.1	CDY03940	AT1G27700.1	21798944
AT2G31260.1	CDY60275	AT1G27700.1	21798944
AT2G31260.1	CDY67977	AT1G27700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24745	Canola	extracellular, plasma membrane	26.38	52.38
AT2G31260.1	Thale cress	plasma membrane	82.84	51.85
CDY15410	Canola	mitochondrion, plasma membrane	85.06	50.72
CDY19070	Canola	plasma membrane	84.87	46.32
GSMUA_Achr10P...	Banana	mitochondrion	45.94	46.28
KRH67361	Soybean	mitochondrion	69.37	43.12
KRH32171	Soybean	golgi, mitochondrion, nucleus, plasma membrane	68.27	42.87
KRG95650	Soybean	plasma membrane	68.27	42.58
KRH19544	Soybean	mitochondrion, plasma membrane	68.08	42.51
PGSC0003DMT400080577	Potato	mitochondrion, plasma membrane	66.42	41.47
Solyc04g008630.2.1	Tomato	plasma membrane	66.05	39.82
VIT_07s0005g03100.t01	Wine grape	mitochondrion, plasma membrane	66.97	39.46
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	10.33	35.22
TraesCS4A01G079800.1	Wheat	plasma membrane	55.35	33.9
TraesCS4D01G224800.1	Wheat	plasma membrane	54.8	33.48
HORVU0Hr1G008860.2	Barley	plasma membrane	54.98	33.33
TraesCS4B01G224200.1	Wheat	plasma membrane	54.98	33.33
OQU92911	Sorghum	plasma membrane	54.43	33.22
GSMUA_Achr1P03240_001	Banana	mitochondrion	57.2	32.87
Os03t0248000-02	Rice	plasma membrane	54.24	32.59
Zm00001d028417_P001	Maize	plasma membrane	53.69	31.7
Os10t0163100-01	Rice	mitochondrion, plasma membrane	53.14	31.07
KXG38175	Sorghum	mitochondrion	51.29	29.99

Protein Annotations

MapMan:35.1	GO:A0A078FCQ8	UniProt:A0A078FCQ8	InterPro:Autophagy-rel_prot_9	EnsemblPlants:CDY10782	ProteinID:CDY10782
ProteinID:CDY10782.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0030659	GO:GO:0031410	EnsemblPlantsGene:GSBRNA2T00048616001
PFAM:PF04109	PANTHER:PTHR13038	PANTHER:PTHR13038:SF16	TMHMM:TMhelix	UniParc:UPI0004EEDAD8	SEG:seg

Description

BnaA05g11540DAutophagy-related protein 9 [Source:UniProtKB/TrEMBL;Acc:A0A078FCQ8]

Coordinates

chrLK032006:+:682641..686142

Molecular Weight (calculated)

63102.1 Da

IEP (calculated)

7.160

GRAVY (calculated)

-0.014

Length

542 amino acids

Sequence
(BLAST)

001: MMSTWQKAPN VFNFFKWQRT EPSSSLTTGL LDNASHEIEL SNYGGVIPSP GSESPSGLLN GESLTVQPIT DLDLFFERLY SYYRYKGLWC IIVKWAVELL
101: SLGFIICFSG FFLLYVDWRG LKDAKCGMDA VESWTKPCDL VKEAIHEHPL SPFTLTTAII VGYLALFFIY WLFCFLRFFA QLKDTLDFSH FYYNSLHVTD
201: NEILTMPWET VLENFVQLQS SQRLCWTLNW FILQSMFDCN FRVRRDFVSN PTMLKKQLFA VGVAMLMLSS YLVIFMLVYL FLRHAEQFYN HPSTASSRRW
301: SNLSRWLFRE FNEVDHLFKY RINNSAEHAS EYLNQISSGG SYMRSQFIMN LLWYAAVFGT ITAISRAAVS DEILVLDPVK TMTFVVQHTH YMPKRWRGKE
401: NKDDVRLELK TLFQYTGMML LEEMASIFIT PFLLMFVVPK RVDDILQFIR NFTVDIEGVG NVYSFNAFDS RTMGILNMGK MEKSFLSFQS SFPTWESNSL
501: EKQFLSNLRT FRDQKLPEIN TRHSSSPTRP PHETSTSSTT LG

Best Arabidopsis Sequence Match ( AT2G31260.1 )
(BLAST)

001: MMSSGHKGPN VRNFFKWQRG ESSSSLTTGL LHNESHEIEL SNYGGIPSPG SESPSGLLNG ESLNVQPIAD LDLFVERLYS YYRDKGLWCI IVKWAVELLS
101: LGFIICFSGF FLLYVDWNGL QNAKCGMDAV ESGTKPCDLV KEAIHPHPLS PFTLTTAIIV GYLALFSVYW LFCFLRFFAQ LKDTLDFRHF YYNNLHVTDN
201: EILTMPWATV LEKVVQLQSS QCLCVVKDLS AHDMVMRLMR KENYLIGMLN KGLLSFPISH WIPGAGPAVK SAPDGTQYHL VLTKTLEWTL NWCILQSMFD
301: CNFRVRRDFV SNPTTLKKRL FVVGLAMLLL SPFLVIFMLV YLFLRHAEQF YNHPSTASSR RWSNLSKWLF REFNEVDHLF KHRINSSVVH ASEYLKQFPS
401: PIISIIAKFV SFVSGGFAAV LIIIAFLEES LLEGHIFGRN LFWYAAVFGT ITAISRAAIS DELLVLDPVG TMSLVVQNTH YMPKRWRGKE NKDDVRLELE
501: TLFQYTGMML LEEIASIFIT PFLLMFVVPK RVDDILQFIK DFTVDIEGVG HVCSFSAFYF ENHGNIKYGS PHNATRREQR SSQGKMEKSF LSFQSSYPSW
601: ESDSLGKQFL SNLRTFRDRK LHEINTRHSS PSRAWRESTN TPALYRDIPR NPLASGNHTD SMWLIDPDQR NHPYLLDWYY TSQAHNRTDH PIERANEILT
701: ANQNATDCWP PDLGIRGEDS RDLLNMEAST SGQFFRESIL RHDQPEGEDS YGSQHPLDGR NQWWGRGNHS QISTAHPATT NSFIEPPDFI NRYTAGNLLD
801: NSWSRRSIEE EDEEEEELDW EENARRNLSR TTFMDDNDIE AGIDLHFDDV YSSRPQETST SSTTLR

Arabidopsis Description

ATG9Autophagy-related protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8RUS5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.