CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX89877
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY15470
CDY18175
CDY35676
CDY51384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	CDX89877	AT1G03630.1	21798944
AT1G27700.1	CDY15470	AT1G03630.1	21798944
AT1G27700.1	CDY18175	AT1G03630.1	21798944
AT1G27700.1	CDY51384	AT1G03630.1	21798944
AT1G27700.1	CDX78905	AT4G19030.1	21798944
AT1G27700.1	CDX98596	AT4G19030.1	21798944
AT1G27700.1	CDX99411	AT4G19030.1	21798944
AT1G27700.1	CDY01565	AT4G19030.1	21798944
AT1G27700.1	CDX70995	AT5G22290.1	21798944
AT1G27700.1	CDX88803	AT5G22290.1	21798944
AT1G27700.1	CDX92368	AT5G22290.1	21798944
AT1G27700.1	CDY09128	AT5G22290.1	21798944
AT1G27700.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90104	Canola	cytosol, golgi, nucleus	94.18	95.49
AT1G27700.1	Thale cress	cytosol	77.4	76.09
CDY60275	Canola	cytosol	72.26	73.52
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	69.86	70.34
VIT_18s0001g09380.t01	Wine grape	nucleus	53.42	45.22
KRH05610	Soybean	nucleus	50.34	44.01
PGSC0003DMT400030171	Potato	nucleus	48.97	41.94
KRH61384	Soybean	cytosol	48.29	41.59
Solyc12g088440.1.1	Tomato	nucleus	48.63	41.52
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	46.92	40.53
PGSC0003DMT400055415	Potato	cytosol	46.58	39.19
KRH52070	Soybean	cytosol, nucleus, peroxisome	47.6	35.73
GSMUA_Achr10P...	Banana	cytosol	36.99	34.73
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	41.1	34.68
Os10t0343100-01	Rice	cytosol	42.12	33.52
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	40.07	32.68
EER92668	Sorghum	cytosol	38.7	31.48
CDY12994	Canola	cytosol, golgi	29.45	31.27
CDY14181	Canola	golgi	29.79	30.96
CDY49304	Canola	cytosol, golgi	28.77	30.88
CDY03541	Canola	cytosol, golgi	29.11	30.25
Os03t0207200-01	Rice	cytosol	37.67	30.22
CDY28171	Canola	cytosol	28.77	30.11
Zm00001d028054_P002	Maize	cytosol	39.73	29.9
TraesCS4D01G254800.1	Wheat	cytosol	36.3	29.78
CDX68636	Canola	cytosol	29.79	29.1
TraesCS4B01G255000.1	Wheat	cytosol	34.93	28.65
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	34.93	28.65
CDY14469	Canola	cytosol, golgi	29.79	24.23
HORVU4Hr1G069400.3	Barley	plastid	35.62	23.74

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	GO:A0A078JRC2	UniProt:A0A078JRC2	EnsemblPlants:CDY67977	ProteinID:CDY67977
ProteinID:CDY67977.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00068368001	PFAM:PF09177	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0004EE970E	SEG:seg

Description

BnaCnng57150DBnaCnng57150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRC2]

Coordinates

chrLK036717:-:5250..6989

Molecular Weight (calculated)

33450.5 Da

IEP (calculated)

8.317

GRAVY (calculated)

-0.728

Length

292 amino acids

Sequence
(BLAST)

001: MTTSLDRWEK DPFFAAAEEV QESADRMESA YRSWIKRGSS NVWDSDQLHR GLHAALGTTK WQLDEFQRAV KSSYDNRLND ETQDRHREFT FVMETQVAKI
101: EKSLKEADDG KGTPRWVRLD EDDRNELALF LTGPSESEKK QAKTQGHRRT ASATPDIGAW NIAVSKDGLL QKSSGEPPVR PPRKVPSVSG FLNFMEPGSK
201: NCVRKWKALD RQGDSDAVLL LPIQANQVRS PNKSCMECEE DCYEKQLHGW YGAIQRQLQR SQYRMRYSKT VQATIWILLL LFLIVVVATH AM

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.