CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH22653
KRH26074
KRH26664
KRH27209
KRH41254
KRH42923
KRH42926
KRH45251
KRH55334
KRH59035
KRH59036
KRH59988

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	KRH26074	AT1G03630.1	21798944
AT1G27700.1	KRH27209	AT1G03630.1	21798944
AT1G27700.1	KRH55334	AT1G03630.1	21798944
AT1G27700.1	KRH11076	AT4G19030.1	21798944
AT1G27700.1	KRH21197	AT4G19030.1	21798944
AT1G27700.1	KRH42923	AT4G19030.1	21798944
AT1G27700.1	KRH42926	AT4G19030.1	21798944
AT1G27700.1	KRH45251	AT4G19030.1	21798944
AT1G27700.1	KRH59035	AT4G19030.1	21798944
AT1G27700.1	KRH59036	AT4G19030.1	21798944
AT1G27700.1	KRH22653	AT5G22290.1	21798944
AT1G27700.1	KRH26664	AT5G22290.1	21798944
AT1G27700.1	KRH41254	AT5G41600.1	21798944
AT1G27700.1	KRH59988	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52070	Soybean	cytosol, nucleus, peroxisome	88.2	76.86
KRH05610	Soybean	nucleus	65.78	66.77
VIT_18s0001g09380.t01	Wine grape	nucleus	56.34	55.36
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	51.92	52.07
PGSC0003DMT400055415	Potato	cytosol	52.8	51.59
PGSC0003DMT400030171	Potato	nucleus	50.74	50.44
Solyc12g088440.1.1	Tomato	nucleus	50.74	50.29
CDX90104	Canola	cytosol, golgi, nucleus	42.18	49.65
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	41.89	49.31
CDY67977	Canola	cytosol, golgi, nucleus	41.59	48.29
AT1G27700.1	Thale cress	cytosol	42.18	48.15
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	41.0	47.93
CDY60275	Canola	cytosol	40.41	47.74
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	40.12	47.39
GSMUA_Achr10P...	Banana	cytosol	38.35	41.8
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	40.41	39.6
Os10t0343100-01	Rice	cytosol	41.0	37.87
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	39.53	37.43
EER92668	Sorghum	cytosol	39.53	37.33
Os03t0207200-01	Rice	cytosol	39.53	36.81
TraesCS4B01G255000.1	Wheat	cytosol	37.76	35.96
TraesCS4D01G254800.1	Wheat	cytosol	37.46	35.67
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	37.46	35.67
Zm00001d028054_P002	Maize	cytosol	40.12	35.05
KRG90327	Soybean	cytosol	30.68	31.61
KRH02874	Soybean	cytosol	29.5	30.4
HORVU4Hr1G069400.3	Barley	plastid	38.05	29.45

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	EMBL:ACUP02002162	EnsemblPlantsGene:GLYMA_04G044400	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
GO:GO:0048193	GO:GO:0048278	UniProt:I1JTP9	EnsemblPlants:KRH61384	ProteinID:KRH61384	ProteinID:KRH61384.1
PFAM:PF09177	PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N
TMHMM:TMhelix	UniParc:UPI000233939F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:3549376..3552367

Molecular Weight (calculated)

37825.3 Da

IEP (calculated)

6.984

GRAVY (calculated)

-0.574

Length

339 amino acids

Sequence
(BLAST)

001: MASSFDRWEK DPFFNAAEEV QESADRMEST YRTWIHAMRD ASSPWNCDEL RRDLQTTLGT AKWQLEEFER AARSSYSKVS SEDARNRHRD FIHAIGGKIK
101: KVEHSLQESV HSGSKASLPW MRLDEGERDE LASFLSGIPA AGGKGLIECV GRDCESLQTN YSSNLLVSSG WGSSEAAPEK SHGHRRAASA DADIGNWKIT
201: VSDDVQQSSS SNGSSGPTPM HKVASLSGFF GSMETISKLK WPKNGYRKLK AVNPCEEVDK ALLAPAGLNG GIKAYYERSK SCLDNGDECY DKQLQGWYGA
301: LHRQLQRSQY QMQYNRPVQM AVWAVILLCF IVLIAFCTM

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.