Factsheet for Os03t0207200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0226300-01
Os01t0736900-01
Os02t0265900-01
Os04t0678700-01
Os05t0526400-01
Os06t0503400-01
Os10t0496900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	Os04t0678700-01	AT1G03630.1	21798944
AT1G27700.1	Os10t0496900-02	AT1G03630.1	21798944
AT1G27700.1	Os01t0226300-01	AT5G41600.1	21798944
AT1G27700.1	Os01t0736900-01	AT5G41600.1	21798944
AT1G27700.1	Os02t0265900-01	AT5G41600.1	21798944
AT1G27700.1	Os05t0526400-01	AT5G41600.1	21798944
AT1G27700.1	Os06t0503400-01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92668	Sorghum	cytosol	69.78	70.75
TraesCS4B01G255000.1	Wheat	cytosol	65.66	67.13
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	64.56	66.01
TraesCS4D01G254800.1	Wheat	cytosol	64.01	65.45
Zm00001d028054_P002	Maize	cytosol	68.68	64.43
Os10t0343100-01	Rice	cytosol	59.34	58.86
HORVU4Hr1G069400.3	Barley	plastid	63.46	52.74
GSMUA_Achr10P...	Banana	cytosol	39.84	46.62
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	44.51	45.25
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	32.69	41.46
CDY60275	Canola	cytosol	32.69	41.46
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	31.87	40.0
KRH61384	Soybean	cytosol	36.81	39.53
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	30.22	38.19
CDY67977	Canola	cytosol, golgi, nucleus	30.22	37.67
CDX90104	Canola	cytosol, golgi, nucleus	29.67	37.5
KRH05610	Soybean	nucleus	34.34	37.43
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	34.07	36.69
AT1G27700.1	Thale cress	cytosol	29.67	36.36
PGSC0003DMT400030171	Potato	nucleus	34.07	36.36
Solyc12g088440.1.1	Tomato	nucleus	34.07	36.26
PGSC0003DMT400055415	Potato	cytosol	34.07	35.73
VIT_18s0001g09380.t01	Wine grape	nucleus	33.79	35.65
KRH52070	Soybean	cytosol, nucleus, peroxisome	37.36	34.96
Os08t0244100-01	Rice	cytosol, golgi, nucleus	26.37	26.59
Os05t0443700-01	Rice	cytosol	9.89	10.75

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	EntrezGene:4332002	ProteinID:ABF94558.1	ProteinID:BAF11238.1	ProteinID:BAS82876.1
ProteinID:EEE58550.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:Os03g0207200	EnsemblPlants:Os03t0207200-01	PFAM:PF09177	PANTHER:PTHR34949
PANTHER:PTHR34949:SF3	UniProt:Q10Q73	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix
UniParc:UPI0000DB4519	RefSeq:XP_015627759.1	SEG:seg	:	:	:

Description

Syntaxin 6, N-terminal domain containing protein. (Os03t0207200-01)

Coordinates

chr3:-:5609827..5612733

Molecular Weight (calculated)

40027.1 Da

IEP (calculated)

6.859

GRAVY (calculated)

-0.479

Length

364 amino acids

Sequence
(BLAST)

001: MATSFDRWEK DPFFPAAEEV QGSADRMESV YRIWVQDRSG GDSEAAAAAA AAAVGGGGLP AGELRRELHT ALGTAKWQLD ELERAIRSND KVFSAGKDTK
101: ARHDDFVAAI GCRILEVENN LKESNVAEGR GALSWIDLDE DERNDLATFL SASSFQQRDK VVTIPSVGDI DVGNNAAMVK KDMYADSSKD SGSAELSSAR
201: VKEETHRGHR RAASAHADIG SWTMLCPNES ESSADLPYDD KHQEPLLKIV KTCALTSALQ SKPRTKKKGG SVKWAAVDQQ DVEETIPLSS QMGQGSDRCF
301: ERSKSCVSTC DESTYNKKLY GCLGALHRRL QRSRYRIRYG RPVQLIVLAV AALLIFMCVF KKIW

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.