Factsheet for Os08t0244100-01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14780	Sorghum	cytosol, golgi, nucleus	64.54	65.27
Zm00001d024418_P004	Maize	cytosol	61.77	60.43
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	21.05	44.71
GSMUA_Achr2P04930_001	Banana	cytosol	39.06	40.99
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	39.61	39.39
GSMUA_Achr1P10310_001	Banana	cytosol	35.73	34.68
CDY49304	Canola	cytosol, golgi	25.21	33.46
KRG90327	Soybean	cytosol	29.92	32.83
CDY12994	Canola	cytosol, golgi	24.65	32.36
KRH02874	Soybean	cytosol	28.81	31.61
Bra010294.1-P	Field mustard	golgi	24.38	31.21
AT4G30240.1	Thale cress	cytosol, golgi	25.76	31.0
CDY14181	Canola	golgi	24.1	30.96
CDY03541	Canola	cytosol, golgi	23.82	30.61
AT2G18860.1	Thale cress	cytosol	24.1	29.39
CDY28171	Canola	cytosol	22.71	29.39
Os10t0343100-01	Rice	cytosol	29.36	28.88
CDX68636	Canola	cytosol	22.71	27.42
Os03t0207200-01	Rice	cytosol	26.59	26.37
Bra011176.1-P	Field mustard	cytosol	22.71	24.92
CDY14469	Canola	cytosol, golgi	23.55	23.68
Bra038827.1-P	Field mustard	cytosol, plasma membrane	24.38	20.95
Os05t0443700-01	Rice	cytosol	10.25	11.04

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	EntrezGene:9268458	EMBL:AK064015	EMBL:AK101898	ProteinID:BAD05450.1
ProteinID:BAH94192.1	ProteinID:BAT04518.1	ncoils:Coil	ProteinID:EEE68306.1	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
GO:GO:0048193	GO:GO:0048278	EnsemblPlantsGene:Os08g0244100	EnsemblPlants:Os08t0244100-01	PFAM:PF09177	PANTHER:PTHR19957
PANTHER:PTHR19957:SF118	UniProt:Q6Z9Z3	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix
UniParc:UPI000022F248	RefSeq:XP_015651025.1	SEG:seg	:	:	:

Description

Syntaxin 6, N-terminal domain containing protein. (Os08t0244100-01);Syntaxin 6, N-terminal domain containing protein. (Os08t0244100-03)

Coordinates

chr8:-:8802820..8806880

Molecular Weight (calculated)

41135.2 Da

IEP (calculated)

5.966

GRAVY (calculated)

-0.691

Length

361 amino acids

Sequence
(BLAST)

001: MAAAGGLEQW QKDGFFQAAE EVQESADLME SIYRTWMRER DSGANLEELS DLQRELKTAL GTAKWQLEQF ERAISMSNDK YSLEEGTLAR RRQFVVAMED
101: QISQVEKQIN DYSIDNDRRG LNWVKLDDEE RDDLVAFLSA PAQLSQDTKK RDNTYHSPSK QKNALIGAND PRDMAAISKD RHKTEALCRE ISNGQSEACC
201: LAEQLNGHST SPSSGGEHWK IDISDDKDDD RKLSPNKVEA SSQATAFSGI MKTTESFTRV RWLRNSLWKA KSDEHLPLRY DMPNHLDWRV ITLLAQRFNG
301: LTERSRSCFS GWKENSRVSG RMGGLHIQGP QYNTQFGRSI RITLLLVLSI FLIVPFLVYS A

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.