Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49304 | Canola | cytosol, golgi | 70.27 | 76.47 |
| CDY12994 | Canola | cytosol, golgi | 70.61 | 76.0 |
| AT4G30240.1 | Thale cress | cytosol, golgi | 55.07 | 54.33 |
| VIT_11s0052g00960.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 29.39 | 51.18 |
| Bra038827.1-P | Field mustard | cytosol, plasma membrane | 62.5 | 44.05 |
| KRG90327 | Soybean | cytosol | 44.26 | 39.82 |
| KRH02874 | Soybean | cytosol | 43.58 | 39.21 |
| GSMUA_Achr2P04930_001 | Banana | cytosol | 36.82 | 31.69 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, nucleus | 37.84 | 30.85 |
| GSMUA_Achr1P10310_001 | Banana | cytosol | 35.47 | 28.23 |
| AT1G27700.1 | Thale cress | cytosol | 27.7 | 27.61 |
| Zm00001d024418_P004 | Maize | cytosol | 31.08 | 24.93 |
| EES14780 | Sorghum | cytosol, golgi, nucleus | 29.73 | 24.65 |
| Os08t0244100-01 | Rice | cytosol, golgi, nucleus | 29.39 | 24.1 |
Protein Annotations
| Gene3D:1.20.58.90 | MapMan:35.2 | EntrezGene:816401 | UniProt:A0A178VSR4 | ProteinID:AEC06815.1 | EMBL:AK226210 |
| ArrayExpress:AT2G18860 | EnsemblPlantsGene:AT2G18860 | RefSeq:AT2G18860 | TAIR:AT2G18860 | RefSeq:AT2G18860-TAIR-G | EnsemblPlants:AT2G18860.1 |
| TAIR:AT2G18860.1 | EMBL:BT022066 | EMBL:BT026064 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | GO:GO:0048193 | RefSeq:NP_179476.2 | ProteinID:OAP07892.1 | PFAM:PF09177 | PO:PO:0000293 |
| PANTHER:PTHR34949 | PANTHER:PTHR34949:SF3 | UniProt:Q501A1 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin-6_N |
| TMHMM:TMhelix | UniParc:UPI0000196B9D | SEG:seg | : | : | : |
Description
At2g18860 [Source:UniProtKB/TrEMBL;Acc:Q501A1]
Coordinates
chr2:+:8163942..8166006
Molecular Weight (calculated)
33777.2 Da
IEP (calculated)
6.080
GRAVY (calculated)
-0.424
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVVNSFDLW QKDVFFSAAE EVQKSTDIME SAYRLWIREK KDEICKELQA ALGTAKWQLE EFEKAVRLSH KRCGDNDSSS TRHKQFVTAI ENQIHRVETS
101: LQEAYSENGK KPLRWVDLNE EERDDLAMFL SGSSRTSQSF SGESSIKSRE STNSSLVENV MEVSAKVTFK KAKVYGDGSE CVIDIEERVT PGQAEKSVGL
201: RRIWSSPNFN SLRIIVPGGD NEEEKETLVA QIEATPKVKG TKSVLWMQRL PDHNQLFDKT GCFQNPIRLP FNHPIKFIVS LLLMVFLLLP FVVYLS
101: LQEAYSENGK KPLRWVDLNE EERDDLAMFL SGSSRTSQSF SGESSIKSRE STNSSLVENV MEVSAKVTFK KAKVYGDGSE CVIDIEERVT PGQAEKSVGL
201: RRIWSSPNFN SLRIIVPGGD NEEEKETLVA QIEATPKVKG TKSVLWMQRL PDHNQLFDKT GCFQNPIRLP FNHPIKFIVS LLLMVFLLLP FVVYLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.