Factsheet for Bra038827.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49304	Canola	cytosol, golgi	54.76	84.56
CDY12994	Canola	cytosol, golgi	53.1	81.09
AT2G18860.1	Thale cress	cytosol	44.05	62.5
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	21.9	54.12
Bra010294.1-P	Field mustard	golgi	35.95	53.55
Bra011176.1-P	Field mustard	cytosol	36.67	46.81
KRG90327	Soybean	cytosol	30.24	38.6
KRH02874	Soybean	cytosol	30.0	38.3
GSMUA_Achr2P04930_001	Banana	cytosol	26.19	31.98
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	27.14	31.41
GSMUA_Achr1P10310_001	Banana	cytosol	26.19	29.57
Zm00001d024418_P004	Maize	cytosol	24.52	27.91
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	19.05	27.78
EES14780	Sorghum	cytosol, golgi, nucleus	23.33	27.45
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	18.1	26.48
Os08t0244100-01	Rice	cytosol, golgi, nucleus	20.95	24.38

Protein Annotations

EnsemblPlants:Bra038827.1	EnsemblPlants:Bra038827.1-P	EnsemblPlantsGene:Bra038827	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
ncoils:Coil	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg	SUPFAM:SSF47661
UniParc:UPI0002541091	UniProt:M4FCK8	MapMan:35.2	:	:	:

Description

AT2G18860 (E=6e-062) | syntaxin family protein

Coordinates

chrA07:-:1249529..1255696

Molecular Weight (calculated)

46661.2 Da

IEP (calculated)

5.875

GRAVY (calculated)

-0.201

Length

420 amino acids

Sequence
(BLAST)

001: MMVVNSFDLW QKDVFFSAAE EVQKSADIME SAYRLWIREK KDDIFKELQA ALGTAKWQLE EFEKAVRLSH RQCGDDSTST TRHKQFVAAI ENQIHRVEAS
101: LQETYSENGK EPLLWVNLSE EERDDLAMFL SGSSLTSHSF SSESSIKSNV AEVTNDVNGS ECVIDIQESA KPRNAEKTVG TRRTWSSPDF SSLRIIVPGD
201: NEQEEEKLVT QIESTPKVKG TKPVLWMQRL PDHTQPSERE KLHSYRSPSV VGRASHCRYV REDRCSDRLS PVTCFLFDCR PVSSLASDGS FSIGFAGFVS
301: LGRDGFSNIS IAGFVSPGKD GFFSILIAGS FSGYGGVCNR LFVFLSVLVD LSVFDSMARA LSILTTSASS YLFELLALPV CRGLVVGVRL LDAHLLRGGD
401: HTFACRWWGM GTRGSACMSC

Best Arabidopsis Sequence Match ( AT2G18860.3 )
(BLAST)

001: MMVVNSFDLW QKDVFFSAAE EVQKSTDIME SAYRLWIREK KDEICKELQA ALGTAKWQLE EFEKAVRLSH KRCGDNDSSS TRHKQFVTAI ENQIHRVETS
101: LQEAYSENGK KPLRWVDLNE EERDDLAMFL SGSSRTSQSF SGESSIKSRE STNSSLVENV MEVSAKVTFK KAKVYGDGSE CVIDIEERVT PGQAEKSVGL
201: RRIWSSPNFN SLRIIVPGGD NEEEKETLVA QIEATPKVKG TKSVLWMQRL PDHNQVSVLI YKL

Arabidopsis Description

At2g18860 [Source:UniProtKB/TrEMBL;Acc:Q501A1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.