Factsheet for Bra010923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra030540.1-P
Bra033415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	Bra030540.1-P	AT1G03630.1	21798944
AT1G27700.1	Bra033415.1-P	AT1G03630.1	21798944
AT1G27700.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G27700.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G27700.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G27700.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G27700.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90104	Canola	cytosol, golgi, nucleus	98.96	98.96
AT1G27700.1	Thale cress	cytosol	78.12	75.76
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	75.0	75.26
VIT_18s0001g09380.t01	Wine grape	nucleus	53.82	44.93
KRH05610	Soybean	nucleus	50.69	43.71
KRH61384	Soybean	cytosol	49.31	41.89
PGSC0003DMT400030171	Potato	nucleus	48.96	41.35
Solyc12g088440.1.1	Tomato	nucleus	48.61	40.94
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	47.22	40.24
PGSC0003DMT400055415	Potato	cytosol	46.88	38.9
KRH52070	Soybean	cytosol, nucleus, peroxisome	48.96	36.25
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	41.67	34.68
GSMUA_Achr10P...	Banana	cytosol	37.15	34.41
Os10t0343100-01	Rice	cytosol	42.71	33.52
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	40.97	32.96
EER92668	Sorghum	cytosol	39.58	31.75
Os03t0207200-01	Rice	cytosol	38.19	30.22
Zm00001d028054_P002	Maize	cytosol	40.28	29.9
TraesCS4D01G254800.1	Wheat	cytosol	36.81	29.78
Bra010294.1-P	Field mustard	golgi	28.47	29.08
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	35.42	28.65
TraesCS4B01G255000.1	Wheat	cytosol	35.42	28.65
Bra011176.1-P	Field mustard	cytosol	28.47	24.92
HORVU4Hr1G069400.3	Barley	plastid	36.11	23.74
Bra038827.1-P	Field mustard	cytosol, plasma membrane	27.78	19.05

Protein Annotations

EnsemblPlants:Bra010923.1	EnsemblPlants:Bra010923.1-P	EnsemblPlantsGene:Bra010923	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	PFAM:PF09177	SEG:seg	SUPFAM:SSF47661
TMHMM:TMhelix	UniParc:UPI000254588E	UniProt:M4D370	MapMan:35.2	:	:

Description

AT1G27700 (E=3e-116) | protein binding

Coordinates

chrA08:+:17131091..17132390

Molecular Weight (calculated)

32973.9 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.693

Length

288 amino acids

Sequence
(BLAST)

001: MTTSLDRWEK DPFFAAAEEV QESADRMESA YRSWIKRGSS NVWDSDQLHR GLHAALGTTK WQLDEFQRAV KSSYDNRVSD ETRDRHREFT FVMETQVAKI
101: EKSLKEADDG KGTPRWVRLD EDDRNELALF LTGPSESEKK QGHRRAASAA PEIGAWNIAV SEDGLLQKPS GEPPVRPPRK VPSVSGFLNF MEPGSKNCVR
201: KWKALDRQGD SDAVLLLPIQ ANQVRSPNKS CMECEEDCYE KQLHGWYGAI QRQLQRSQYR MRYSKTVQAT IWILLLLFLI VVVATHAM

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.