Factsheet for PGSC0003DMT400030171

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400032086
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400050482
PGSC0003DMT400064369
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	PGSC0003DMT400039734	AT1G03630.1	21798944
AT1G27700.1	PGSC0003DMT400047264	AT1G03630.1	21798944
AT1G27700.1	PGSC0003DMT400064369	AT1G03630.1	21798944
AT1G27700.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G27700.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G27700.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G27700.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT1G27700.1	PGSC0003DMT400032086	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088440.1.1	Tomato	nucleus	98.53	98.25
PGSC0003DMT400055415	Potato	cytosol	60.41	59.37
KRH05610	Soybean	nucleus	50.73	51.8
KRH61384	Soybean	cytosol	50.44	50.74
VIT_18s0001g09380.t01	Wine grape	nucleus	51.32	50.72
CDY67977	Canola	cytosol, golgi, nucleus	41.94	48.97
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	41.35	48.96
CDX90104	Canola	cytosol, golgi, nucleus	41.35	48.96
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	40.47	48.08
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	40.76	47.93
AT1G27700.1	Thale cress	cytosol	41.64	47.81
CDY60275	Canola	cytosol	40.18	47.74
KRH52070	Soybean	cytosol, nucleus, peroxisome	48.39	42.42
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	41.06	40.46
GSMUA_Achr10P...	Banana	cytosol	35.48	38.91
Os10t0343100-01	Rice	cytosol	38.71	35.97
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	36.36	34.64
Os03t0207200-01	Rice	cytosol	36.36	34.07
EER92668	Sorghum	cytosol	35.48	33.7
TraesCS4D01G254800.1	Wheat	cytosol	34.02	32.58
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	33.72	32.3
TraesCS4B01G255000.1	Wheat	cytosol	33.72	32.3
Zm00001d028054_P002	Maize	cytosol	36.36	31.96
HORVU4Hr1G069400.3	Barley	plastid	34.9	27.17

Protein Annotations

Gene3D:1.20.58.90	EntrezGene:102588316	MapMan:35.2	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	UniProt:M1ATU4	PFAM:PF09177
EnsemblPlantsGene:PGSC0003DMG401011550	PGSC:PGSC0003DMG401011550	EnsemblPlants:PGSC0003DMT400030171	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI000294F1EA	RefSeq:XP_006342658.1	SEG:seg

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401011550]

Coordinates

chr12:+:56275870..56279430

Molecular Weight (calculated)

38855.3 Da

IEP (calculated)

5.333

GRAVY (calculated)

-0.694

Length

341 amino acids

Sequence
(BLAST)

001: MGSYFDRWEK DPFFSAAEEV QESADRMEST YRTWIHALKD TSGRWNSDEL CRDLRTTLGT AKWQLEEFDR AVSSSYNNTS TDDAKERHGE FVIAMDNQVK
101: KVEKSLNESA FSQGNQWVRL DERELDELAV FLSGPSTSSS FSDKSSVKVD EVEQKPALWE EDCKQRMPEY SKSSSNLVDG SQVDTKDEMY SGHRKTASAC
201: GDIGAWKIAV ADDICGKQPV PPPRKIPSIQ GLLNCVESAT KLKWSKNGYR KLRFNSDDHQ EADCTLPQSL PLTRGINTCC ERSKSCLDCC DESYQKQLNG
301: WYGAVQRQLQ RSQYYVKYNR PVQMVSSVVL IFFIVLLGFH I

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.