Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010923.1-P | Field mustard | cytosol, golgi, nucleus | 75.76 | 78.12 |
| CDX90104 | Canola | cytosol, golgi, nucleus | 75.42 | 77.78 |
| Bra030059.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 75.08 | 77.7 |
| CDY67977 | Canola | cytosol, golgi, nucleus | 76.09 | 77.4 |
| CDY60275 | Canola | cytosol | 74.75 | 77.35 |
| CDY03940 | Canola | cytosol, endoplasmic reticulum, nucleus | 73.4 | 75.17 |
| VIT_18s0001g09380.t01 | Wine grape | nucleus | 54.21 | 46.67 |
| KRH05610 | Soybean | nucleus | 48.82 | 43.41 |
| KRH61384 | Soybean | cytosol | 48.15 | 42.18 |
| Solyc12g088440.1.1 | Tomato | nucleus | 48.15 | 41.81 |
| PGSC0003DMT400030171 | Potato | nucleus | 47.81 | 41.64 |
| Solyc04g078130.2.1 | Tomato | cytosol, golgi, nucleus | 46.13 | 40.53 |
| PGSC0003DMT400055415 | Potato | cytosol | 45.79 | 39.19 |
| KRH52070 | Soybean | cytosol, nucleus, peroxisome | 47.47 | 36.25 |
| GSMUA_Achr6P30760_001 | Banana | cytosol, golgi, nucleus | 40.74 | 34.97 |
| GSMUA_Achr10P... | Banana | cytosol | 35.02 | 33.44 |
| Os10t0343100-01 | Rice | cytosol | 41.08 | 33.24 |
| GSMUA_Achr4P10890_001 | Banana | cytosol, golgi, nucleus | 39.73 | 32.96 |
| EER92668 | Sorghum | cytosol | 38.38 | 31.75 |
| TraesCS4D01G254800.1 | Wheat | cytosol | 36.03 | 30.06 |
| Os03t0207200-01 | Rice | cytosol | 36.36 | 29.67 |
| AT4G30240.1 | Thale cress | cytosol, golgi | 29.97 | 29.67 |
| Zm00001d028054_P002 | Maize | cytosol | 38.72 | 29.64 |
| TraesCS4A01G049700.1 | Wheat | cytosol, golgi, nucleus | 34.68 | 28.93 |
| TraesCS4B01G255000.1 | Wheat | cytosol | 34.68 | 28.93 |
| AT2G18860.1 | Thale cress | cytosol | 27.61 | 27.7 |
| HORVU4Hr1G069400.3 | Barley | plastid | 35.35 | 23.97 |
Protein Annotations
| Gene3D:1.20.58.90 | MapMan:35.2 | EntrezGene:839663 | UniProt:A0A178WLU2 | ProteinID:AEE30866.1 | ArrayExpress:AT1G27700 |
| EnsemblPlantsGene:AT1G27700 | RefSeq:AT1G27700 | TAIR:AT1G27700 | RefSeq:AT1G27700-TAIR-G | EnsemblPlants:AT1G27700.1 | TAIR:AT1G27700.1 |
| EMBL:AY052684 | EMBL:AY098960 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048193 |
| GO:GO:0048278 | RefSeq:NP_564292.1 | ProteinID:OAP18535.1 | PFAM:PF09177 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF118 | UniProt:Q940U5 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin-6_N | TMHMM:TMhelix | UniParc:UPI00000A3333 | SEG:seg | : |
Description
At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
Coordinates
chr1:-:9639859..9641902
Molecular Weight (calculated)
34053.9 Da
IEP (calculated)
6.939
GRAVY (calculated)
-0.755
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.