Factsheet for Solyc12g088440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc07g054210.2.1
Solyc08g081730.2.1
Solyc10g006900.2.1
Solyc11g068750.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	Solyc07g054210.2.1	AT1G03630.1	21798944
AT1G27700.1	Solyc10g006900.2.1	AT1G03630.1	21798944
AT1G27700.1	Solyc12g013710.1.1	AT1G03630.1	21798944
AT1G27700.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G27700.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G27700.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G27700.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT1G27700.1	Solyc08g081730.2.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030171	Potato	nucleus	98.25	98.53
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	59.65	60.35
KRH05610	Soybean	nucleus	50.29	51.5
KRH61384	Soybean	cytosol	50.29	50.74
VIT_18s0001g09380.t01	Wine grape	nucleus	50.58	50.14
CDY67977	Canola	cytosol, golgi, nucleus	41.52	48.63
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	40.94	48.61
CDX90104	Canola	cytosol, golgi, nucleus	40.94	48.61
AT1G27700.1	Thale cress	cytosol	41.81	48.15
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	40.06	47.74
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	40.35	47.59
CDY60275	Canola	cytosol	39.77	47.39
KRH52070	Soybean	cytosol, nucleus, peroxisome	48.54	42.67
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	40.94	40.46
GSMUA_Achr10P...	Banana	cytosol	35.67	39.23
Os10t0343100-01	Rice	cytosol	38.89	36.24
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	36.84	35.2
Os03t0207200-01	Rice	cytosol	36.26	34.07
EER92668	Sorghum	cytosol	35.38	33.7
TraesCS4D01G254800.1	Wheat	cytosol	33.92	32.58
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	33.63	32.3
TraesCS4B01G255000.1	Wheat	cytosol	33.63	32.3
Zm00001d028054_P002	Maize	cytosol	36.26	31.96
HORVU4Hr1G069400.3	Barley	plastid	34.8	27.17

Protein Annotations

EnsemblPlants:Solyc12g088440.1.1	EnsemblPlantsGene:Solyc12g088440.1	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg	SUPFAM:SSF47661	TMHMM:TMhelix
UniParc:UPI000276AB54	UniProt:K4DGR5	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr12:+:63813970..63816925

Molecular Weight (calculated)

39024.5 Da

IEP (calculated)

5.531

GRAVY (calculated)

-0.692

Length

342 amino acids

Sequence
(BLAST)

001: MGSYFDRWEK DPFFSAAEEV QESADRMEST YRTWIHALKD TSGRWNSDEL CRDLRTTLGT AKWQLEEFDR AVSSSYSNTS TDDAKERHGE FVIAMDNQIK
101: KVEKSLNESA FSQGNQWVRL DERELDELAV FLSGPSTSSS FSDKSSVKVD EVEQKPALWE EDCKQRMPEY SKSSSNLVDG SQVDTKDEMY SGHRKTASAC
201: GDISAWKIAV ADDICGKQPV PPPRKIPSIQ GLLNCVESAT KLKWSKNGYR KLRFNSDDHQ EADCTLPQSL PLTRGINTCC ERSKSCLDCC DERYQKQLNG
301: WYGAVQRQLQ RSQYYVKYNR PVQTVSSVVL LIFFIVLLGF HI

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.