Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G049700.1 | Wheat | cytosol, golgi, nucleus | 97.19 | 97.19 |
| TraesCS4B01G255000.1 | Wheat | cytosol | 94.66 | 94.66 |
| HORVU4Hr1G069400.3 | Barley | plastid | 91.29 | 74.2 |
| EER92668 | Sorghum | cytosol | 70.79 | 70.19 |
| Os03t0207200-01 | Rice | cytosol | 65.45 | 64.01 |
| Zm00001d028054_P002 | Maize | cytosol | 66.29 | 60.82 |
| GSMUA_Achr4P10890_001 | Banana | cytosol, golgi, nucleus | 44.94 | 44.69 |
| GSMUA_Achr10P... | Banana | cytosol | 38.2 | 43.73 |
| Bra030059.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 32.58 | 40.42 |
| CDY60275 | Canola | cytosol | 32.58 | 40.42 |
| CDY03940 | Canola | cytosol, endoplasmic reticulum, nucleus | 32.58 | 40.0 |
| KRH61384 | Soybean | cytosol | 35.67 | 37.46 |
| KRH05610 | Soybean | nucleus | 34.83 | 37.13 |
| Bra010923.1-P | Field mustard | cytosol, golgi, nucleus | 29.78 | 36.81 |
| CDX90104 | Canola | cytosol, golgi, nucleus | 29.49 | 36.46 |
| Solyc04g078130.2.1 | Tomato | cytosol, golgi, nucleus | 34.55 | 36.39 |
| CDY67977 | Canola | cytosol, golgi, nucleus | 29.78 | 36.3 |
| AT1G27700.1 | Thale cress | cytosol | 30.06 | 36.03 |
| PGSC0003DMT400055415 | Potato | cytosol | 34.83 | 35.73 |
| VIT_18s0001g09380.t01 | Wine grape | nucleus | 34.55 | 35.65 |
| PGSC0003DMT400030171 | Potato | nucleus | 32.58 | 34.02 |
| Solyc12g088440.1.1 | Tomato | nucleus | 32.58 | 33.92 |
| KRH52070 | Soybean | cytosol, nucleus, peroxisome | 36.24 | 33.16 |
| TraesCS1D01G275900.1 | Wheat | cytosol, golgi, nucleus | 11.24 | 11.94 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G254800.1 | EnsemblPlantsGene:TraesCS4D01G254800 | Gene3D:1.20.58.90 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0048193 |
| InterPro:SNARE | InterPro:Syntaxin-6_N | PANTHER:PTHR34949 | PANTHER:PTHR34949:SF3 | PFAM:PF09177 | SEG:seg |
| SUPFAM:SSF47661 | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4D:+:423695672..423697682
Molecular Weight (calculated)
38960.9 Da
IEP (calculated)
8.616
GRAVY (calculated)
-0.410
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSFDRWEK DPFFLAAEEV QESADRMESV YKIWVQERSG GGSALGGEVG AAELRRELHT ALGTAKWQLD ELERAIRSND EVLSAGKDTR ALHSNFVAAI
101: GYRILEVENN LKASNVAEGR GTLSWIHLDE SERDDLAAFL SAGPPQHQDK VVTIPSAGDI QVGSNPTRVR KNISADSSND SSGSADLSSA RAKEDAHRGH
201: RRSVSASADI GSSPMSFPNE RDGAAEQSSL GPHRAPLLNI VKACGLPSAL KPKPAIKYKK GAVRWAHADK QDLEAAIPLT NPQLGQSLDG YSERSISYLN
301: TCDGVTYNKK LYGWLGALRK KLQRSQYQIR YGRPAQLILF ALAVLIIFVF VFKTIW
101: GYRILEVENN LKASNVAEGR GTLSWIHLDE SERDDLAAFL SAGPPQHQDK VVTIPSAGDI QVGSNPTRVR KNISADSSND SSGSADLSSA RAKEDAHRGH
201: RRSVSASADI GSSPMSFPNE RDGAAEQSSL GPHRAPLLNI VKACGLPSAL KPKPAIKYKK GAVRWAHADK QDLEAAIPLT NPQLGQSLDG YSERSISYLN
301: TCDGVTYNKK LYGWLGALRK KLQRSQYQIR YGRPAQLILF ALAVLIIFVF VFKTIW
001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM
Arabidopsis Description
At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.