Factsheet for Zm00001d028054_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001820_P001
Zm00001d008982_P001
Zm00001d012776_P001
Zm00001d013937_P001
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020729_P001
Zm00001d032576_P001
Zm00001d037453_P001
Zm00001d038768_P001
Zm00001d039316_P001
Zm00001d043551_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	Zm00001d001820_P001	AT1G03630.1	21798944
AT1G27700.1	Zm00001d013937_P001	AT1G03630.1	21798944
AT1G27700.1	Zm00001d032576_P001	AT1G03630.1	21798944
AT1G27700.1	Zm00001d008982_P001	AT5G41600.1	21798944
AT1G27700.1	Zm00001d012776_P001	AT5G41600.1	21798944
AT1G27700.1	Zm00001d016041_P001	AT5G41600.1	21798944
AT1G27700.1	Zm00001d020229_P001	AT5G41600.1	21798944
AT1G27700.1	Zm00001d020729_P001	AT5G41600.1	21798944
AT1G27700.1	Zm00001d037453_P001	AT5G41600.1	21798944
AT1G27700.1	Zm00001d038768_P001	AT5G41600.1	21798944
AT1G27700.1	Zm00001d039316_P001	AT5G41600.1	21798944
AT1G27700.1	Zm00001d043551_P003	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92668	Sorghum	cytosol	79.12	85.52
Os03t0207200-01	Rice	cytosol	64.43	68.68
TraesCS4B01G255000.1	Wheat	cytosol	62.63	68.26
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	61.34	66.85
TraesCS4D01G254800.1	Wheat	cytosol	60.82	66.29
HORVU4Hr1G069400.3	Barley	plastid	61.08	54.11
GSMUA_Achr10P...	Banana	cytosol	37.89	47.27
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	43.04	46.65
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	32.22	43.55
CDY60275	Canola	cytosol	32.22	43.55
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	31.96	42.76
KRH05610	Soybean	nucleus	35.57	41.32
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	29.9	40.28
KRH61384	Soybean	cytosol	35.05	40.12
CDY67977	Canola	cytosol, golgi, nucleus	29.9	39.73
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	34.54	39.65
CDX90104	Canola	cytosol, golgi, nucleus	29.38	39.58
PGSC0003DMT400055415	Potato	cytosol	35.05	39.19
AT1G27700.1	Thale cress	cytosol	29.64	38.72
VIT_18s0001g09380.t01	Wine grape	nucleus	34.02	38.26
PGSC0003DMT400030171	Potato	nucleus	31.96	36.36
Solyc12g088440.1.1	Tomato	nucleus	31.96	36.26
KRH52070	Soybean	cytosol, nucleus, peroxisome	36.34	36.25
Zm00001d024418_P004	Maize	cytosol	28.61	30.08
Zm00001d038292_P004	Maize	nucleus	9.79	10.38
Zm00001d019814_P001	Maize	mitochondrion	7.47	6.89

Protein Annotations

Gene3D:1.20.58.90	EntrezGene:103632029	MapMan:35.2	UniProt:A0A1D6JRL7	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	ProteinID:ONL94584.1
PFAM:PF09177	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N
TMHMM:TMhelix	UniParc:UPI0008424E2E	EnsemblPlantsGene:Zm00001d028054	EnsemblPlants:Zm00001d028054_P002	EnsemblPlants:Zm00001d028054_T002	SEG:seg

Description

Syntaxin/t-SNARE family protein

Coordinates

chr1:+:21770619..21773788

Molecular Weight (calculated)

43149.7 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.389

Length

388 amino acids

Sequence
(BLAST)

001: MATSFDRWEK DPFFLAAEEV QESADRMESV YRVWVQERSG GDSEAASVTG GPTAAQLRRE LHTALGTAKW QLDELARAVR SNDLVMSAGK DTRARHDDFV
101: TAIGYRILEV ENYLKESNLA DGRGPLSWVH LDEDERDDLA AFLSASPFQQ KDKVVTIPSA GDIEVGSNAA RMKNDISTDS SKDSAGSTDL ISGTAKQDLH
201: RGHRRAASAS ADIGSWSMSI PNECEGTTEQ LSDGSDKLPL HKIVKTCALT STLQSKTRTK WKNGAVRWAG SNQQDVEEAI PLNTSQLSQG LEECFERNKS
301: CLSTCDEHTY NKKLHGWLGA LRRQLQRSQY QIQYGHHIQL IVLALAALVI SKSVYHVCYF KISFFFLVMD LSLGVIVYTE YTILSIIY

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.