Factsheet for PGSC0003DMT400055415

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, plastid
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400032086
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400050482
PGSC0003DMT400064369
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	PGSC0003DMT400039734	AT1G03630.1	21798944
AT1G27700.1	PGSC0003DMT400047264	AT1G03630.1	21798944
AT1G27700.1	PGSC0003DMT400064369	AT1G03630.1	21798944
AT1G27700.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G27700.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G27700.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G27700.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT1G27700.1	PGSC0003DMT400032086	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	91.64	94.08
PGSC0003DMT400030171	Potato	nucleus	59.37	60.41
KRH61384	Soybean	cytosol	51.59	52.8
KRH05610	Soybean	nucleus	50.14	52.1
VIT_18s0001g09380.t01	Wine grape	nucleus	51.59	51.88
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	38.9	46.88
CDX90104	Canola	cytosol, golgi, nucleus	38.9	46.88
CDY60275	Canola	cytosol	38.62	46.69
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	38.62	46.69
CDY67977	Canola	cytosol, golgi, nucleus	39.19	46.58
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	38.9	46.55
KRH52070	Soybean	cytosol, nucleus, peroxisome	51.59	46.02
AT1G27700.1	Thale cress	cytosol	39.19	45.79
GSMUA_Achr10P...	Banana	cytosol	37.46	41.8
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	38.62	38.73
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	38.9	37.71
EER92668	Sorghum	cytosol	38.33	37.05
Os10t0343100-01	Rice	cytosol	38.9	36.78
Zm00001d028054_P002	Maize	cytosol	39.19	35.05
TraesCS4D01G254800.1	Wheat	cytosol	35.73	34.83
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	35.16	34.27
TraesCS4B01G255000.1	Wheat	cytosol	35.16	34.27
Os03t0207200-01	Rice	cytosol	35.73	34.07
HORVU4Hr1G069400.3	Barley	plastid	36.31	28.77

Protein Annotations

EnsemblPlants:PGSC0003DMT400055415	EnsemblPlantsGene:PGSC0003DMG400021515	EntrezGene:102604917	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	PFAM:PF09177	PGSC:PGSC0003DMG400021515	SUPFAM:SSF47661
TMHMM:TMhelix	UniParc:UPI00029480C7	UniProt:M1BXW1	MapMan:35.2	:	:

Description

T-snare [Source:PGSC_GENE;Acc:PGSC0003DMG400021515]

Coordinates

chr4:+:67308503..67318245

Molecular Weight (calculated)

39570.2 Da

IEP (calculated)

6.119

GRAVY (calculated)

-0.628

Length

347 amino acids

Sequence
(BLAST)

001: MASHFDRWEK DPFFSAAEEV QESADRMEST YRTWIHALKD TSGSWNCDAL RRDLRTTLGT AKWQLEEFDR AVRSSYNSKS ADDARDRHHE FFIAIDSQIK
101: KVENSLNESA VSQGKPPLPW VRLDEGEVDE LAAFLSGPST SSAGITHAKV HGVELQIPKW EEAVNQSLPE CSENPLHSED GVRGEAIDEK FLGHRRTASA
201: SADIGAWQIA LGNDISIKEP APPPRRIPSY QGLLNAVESV KELKWPKNGY RKLKFNQEAG NTLPRTQPPT RNINTCYDRN KSCLDGCDDC YDKQLYGWYG
301: AVQRQLQRSQ YYMQYRRPVR IVFSVFLLIF LIGEFANDSC FIYLTFC

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.