CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89811
EER94008
EES11656
EES19841
KXG31516
KXG33320
OQU84758

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	EER94008	AT1G03630.1	21798944
AT1G27700.1	EES11656	AT1G03630.1	21798944
AT1G27700.1	EER89811	AT5G41600.1	21798944
AT1G27700.1	EES19841	AT5G41600.1	21798944
AT1G27700.1	KXG31516	AT5G41600.1	21798944
AT1G27700.1	KXG33320	AT5G41600.1	21798944
AT1G27700.1	OQU84758	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028054_P002	Maize	cytosol	85.52	79.12
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	71.03	71.63
TraesCS4D01G254800.1	Wheat	cytosol	70.19	70.79
TraesCS4B01G255000.1	Wheat	cytosol	70.19	70.79
Os03t0207200-01	Rice	cytosol	70.75	69.78
HORVU4Hr1G069400.3	Barley	plastid	69.36	56.85
GSMUA_Achr10P...	Banana	cytosol	39.83	45.98
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	45.68	45.81
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	34.26	42.86
CDY60275	Canola	cytosol	34.26	42.86
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	33.43	41.38
KRH05610	Soybean	nucleus	37.33	40.12
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	31.75	39.58
KRH61384	Soybean	cytosol	37.33	39.53
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	36.77	39.05
CDX90104	Canola	cytosol, golgi, nucleus	31.2	38.89
CDY67977	Canola	cytosol, golgi, nucleus	31.48	38.7
AT1G27700.1	Thale cress	cytosol	31.75	38.38
PGSC0003DMT400055415	Potato	cytosol	37.05	38.33
VIT_18s0001g09380.t01	Wine grape	nucleus	35.93	37.39
PGSC0003DMT400030171	Potato	nucleus	33.7	35.48
Solyc12g088440.1.1	Tomato	nucleus	33.7	35.38
KRH52070	Soybean	cytosol, nucleus, peroxisome	37.88	34.96
EES14780	Sorghum	cytosol, golgi, nucleus	30.08	30.25
EES19612	Sorghum	cytosol	11.14	12.31

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	EntrezGene:8081857	UniProt:C5WTQ9	EnsemblPlants:EER92668	ProteinID:EER92668
ProteinID:EER92668.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	PFAM:PF09177
PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	InterPro:SNARE	EnsemblPlantsGene:SORBI_3001G463000	SUPFAM:SSF47661	unigene:Sbi.4636
InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0001A828D8	RefSeq:XP_002465670.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:73728756..73732839

Molecular Weight (calculated)

39577.7 Da

IEP (calculated)

6.602

GRAVY (calculated)

-0.443

Length

359 amino acids

Sequence
(BLAST)

001: MATSFDRWEK DPFFLAAEEV QESADRMESV YRVWVQERSG GDSEGASVSG GPSAAELRRE LHTALGTAKW QLDELARAIR SNDLVISAGK GTRARHDDFV
101: MAIGHRILEV EKNLRESNVA EGRGPLSWVH LDEDERDDLA AFLSASPFQQ KDKVVTIPSA GDIEVGSNAA RMKNDISTDS SKDSAGSTDL ISARAKDDLH
201: RGHRRAASAS ADIGSWSMSI PNECEGTTEQ LSNGSDKMPL LKIVKTCALT NTLQPKPRTK CKNGAVRWAG INQQDVEEAI PLSTSQLSQG LEGCFERNKS
301: CLSSCDEHTY NKKLYGWLGA LHRKLQRSQY QIRYGHPIQL ILLALAALVI IVCILRTIW

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.