Factsheet for GSMUA_Achr4P10890_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P14270_001
GSMUA_Achr3P15760_001
GSMUA_Achr3P31920_001
GSMUA_Achr4P08400_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P06850_001
GSMUA_Achr6P31860_001
GSMUA_Achr7P04280_001
GSMUA_Achr8P27830_001
GSMUA_Achr9P05440_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	GSMUA_Achr11P...	AT1G03630.1	21798944
AT1G27700.1	GSMUA_Achr3P14270_001	AT1G03630.1	21798944
AT1G27700.1	GSMUA_Achr7P04280_001	AT1G03630.1	21798944
AT1G27700.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT1G27700.1	GSMUA_Achr10P...	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr3P15760_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr3P31920_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr4P08400_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr5P06850_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr6P31860_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr8P27830_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_Achr9P05440_001	AT5G41600.1	21798944
AT1G27700.1	GSMUA_AchrUn_...	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	47.49	54.66
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	44.97	46.53
Os10t0343100-01	Rice	cytosol	46.93	45.78
EER92668	Sorghum	cytosol	45.81	45.68
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	44.97	45.22
TraesCS4D01G254800.1	Wheat	cytosol	44.69	44.94
Os03t0207200-01	Rice	cytosol	45.25	44.51
TraesCS4B01G255000.1	Wheat	cytosol	44.13	44.38
VIT_18s0001g09380.t01	Wine grape	nucleus	41.62	43.19
Zm00001d028054_P002	Maize	cytosol	46.65	43.04
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	34.08	42.51
CDY60275	Canola	cytosol	34.08	42.51
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	33.8	41.72
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	32.96	40.97
CDX90104	Canola	cytosol, golgi, nucleus	32.96	40.97
KRH05610	Soybean	nucleus	37.99	40.72
CDY67977	Canola	cytosol, golgi, nucleus	32.68	40.07
AT1G27700.1	Thale cress	cytosol	32.96	39.73
KRH61384	Soybean	cytosol	37.43	39.53
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	37.15	39.35
PGSC0003DMT400055415	Potato	cytosol	37.71	38.9
Solyc12g088440.1.1	Tomato	nucleus	35.2	36.84
PGSC0003DMT400030171	Potato	nucleus	34.64	36.36
HORVU4Hr1G069400.3	Barley	plastid	44.13	36.07
KRH52070	Soybean	cytosol, nucleus, peroxisome	37.71	34.7
GSMUA_Achr2P04930_001	Banana	cytosol	31.28	32.56
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	31.84	31.41
GSMUA_Achr1P10310_001	Banana	cytosol	31.28	30.11
GSMUA_AchrUn_...	Banana	nucleus	12.57	10.64

Protein Annotations

EnsemblPlants:GSMUA_Achr4P10890_001	EnsemblPlants:GSMUA_Achr4T10890_001	EnsemblPlantsGene:GSMUA_Achr4G10890_001	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg	SUPFAM:SSF47661
TMHMM:TMhelix	UniParc:UPI000296E969	UniProt:M0SMV6	MapMan:35.2	:	:

Description

Putative syntaxin 6, N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G10890_001]

Coordinates

chr4:-:7864786..7868297

Molecular Weight (calculated)

40495.3 Da

IEP (calculated)

6.444

GRAVY (calculated)

-0.622

Length

358 amino acids

Sequence
(BLAST)

001: MATTFDRWEK DPFFAAAEEV QDSADRLESV YRQWTYTRES ASKSAGRDEP VSGELKRELH TALGTAKWQL EEFEKAVRSN DEALSVGEDT RARHSEFMLA
101: IGSRISALEN SLRETNFKAG EGSLTWVRLD EGENDELAQF LSYTSLEDRK EIPIASAIDV KVGNDLIRTN GEALIDCSKD SRHSKQLSSL HREDQKVHNI
201: HRSASCAGDI GACAITIPSE GEDTSERSSD DRSNLPPPRV LSLSGLSSAL DSTSRMRWYK NGFKKWSAQD RHDVMESIPL RNYEPSQGIN GCYERSKSCL
301: SSRGQDVYNK HLYGYLGAFQ RLLRRSQYQI QYGHHIKTIL WATLVVLLIV IFVLHLNK

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.