Factsheet for GSMUA_AchrUn_randomP12360_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G285600.1	Wheat	cytosol, golgi, nucleus	24.59	31.04
Os05t0443700-01	Rice	cytosol	24.35	30.75
EES19612	Sorghum	cytosol	23.4	30.46
TraesCS1A01G276400.1	Wheat	cytosol, golgi, nucleus	24.11	30.45
TraesCS1D01G275900.1	Wheat	cytosol, golgi, nucleus	24.11	30.45
VIT_08s0007g03310.t01	Wine grape	cytosol	31.44	29.82
Zm00001d038292_P004	Maize	nucleus	23.64	27.32
Zm00001d019814_P001	Maize	mitochondrion	16.08	16.15
GSMUA_Achr2P04930_001	Banana	cytosol	12.77	15.7
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	13.0	15.15
GSMUA_Achr1P10310_001	Banana	cytosol	13.0	14.78
GSMUA_Achr10P...	Banana	cytosol	10.64	14.47
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	11.11	13.58
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	10.64	12.57

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP12360_001	EnsemblPlants:GSMUA_AchrUn_randomT12360_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG12360_001	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N	ncoils:Coil
PANTHER:PTHR34949	PANTHER:PTHR34949:SF2	PFAM:PF09177	SEG:seg	SUPFAM:SSF47661	UniParc:UPI000294B43B
UniProt:M0U8J5	MapMan:35.2	:	:	:	:

Description

Putative syntaxin 6, N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12360_001]

Coordinates

chrchrUn_random:+:58930001..58947497

Molecular Weight (calculated)

47047.5 Da

IEP (calculated)

5.164

GRAVY (calculated)

-0.726

Length

423 amino acids

Sequence
(BLAST)

001: MAESFGRWES DPLFSAAEVV QDSADRMESV FRILSHEQKS AQGDSLDAKL LSSIEYHKRD LVTCLETARW QLEDFERAVT LAALSDTSNS RENAISKFRQ
101: FIRAIREQIS QVEKTVKDSA MEDFNGTSPS MNLNEHDRDG LALFLSGGDL RENQLYYDSS GSIMKRFLNS TTNGDEIVEL KTEEVLPTNG LKYPDHGYEK
201: AGPHHSSRVT EAPAILEDSF GDKGCQEACT AFGSFNMKFG DFAANSYGIN RTRGSLWMLL RNFWPPNKNQ MSFTKRRKDG EDPDDLIVDT ERNIPHSVID
301: VPPSGQLFDR TANELRNFAM AKHRGESSKT GQAGPLPQAA AGGLHVHTRS HAVGAAHEDR GSEQDEREVG NSPRAEEAQS GALTGKKSHK ERLTTAETRL
401: DVLEASMEEL YHGQQRLVGV ESS

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.