Factsheet for GSMUA_Achr2P04930_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P10310_001	Banana	cytosol	56.69	52.42
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	25.87	52.35
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	47.97	45.45
CDY49304	Canola	cytosol, golgi	32.85	41.54
CDY12994	Canola	cytosol, golgi	32.56	40.73
KRG90327	Soybean	cytosol	38.37	40.12
Os08t0244100-01	Rice	cytosol, golgi, nucleus	40.99	39.06
CDY28171	Canola	cytosol	31.1	38.35
CDY14181	Canola	golgi	31.1	38.08
KRH02874	Soybean	cytosol	36.34	37.99
Bra010294.1-P	Field mustard	golgi	31.1	37.94
AT4G30240.1	Thale cress	cytosol, golgi	32.85	37.67
EES14780	Sorghum	cytosol, golgi, nucleus	38.66	37.25
Zm00001d024418_P004	Maize	cytosol	39.83	37.13
AT2G18860.1	Thale cress	cytosol	31.69	36.82
CDY03541	Canola	cytosol, golgi	29.94	36.65
CDX68636	Canola	cytosol	31.1	35.79
GSMUA_Achr10P...	Banana	cytosol	31.4	34.73
Bra011176.1-P	Field mustard	cytosol	30.52	31.91
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	32.56	31.28
CDY14469	Canola	cytosol, golgi	31.69	30.36
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	30.52	30.35
Bra038827.1-P	Field mustard	cytosol, plasma membrane	31.98	26.19
GSMUA_AchrUn_...	Banana	nucleus	15.7	12.77

Protein Annotations

EnsemblPlants:GSMUA_Achr2P04930_001	EnsemblPlants:GSMUA_Achr2T04930_001	EnsemblPlantsGene:GSMUA_Achr2G04930_001	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SUPFAM:SSF47661	TMHMM:TMhelix
UniParc:UPI0002969740	UniProt:M0S584	MapMan:35.2	:	:	:

Description

Putative syntaxin 6, N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G04930_001]

Coordinates

chr2:-:10187515..10189973

Molecular Weight (calculated)

39037.2 Da

IEP (calculated)

8.243

GRAVY (calculated)

-0.483

Length

344 amino acids

Sequence
(BLAST)

001: MAVGGSFDQW QKDAFFSAAE AVQESADIME STYRMWTRNR RNGFGLEASD ELSRELQTAL GTAKWQLEEF EKAVRASHGN YSSQENNTID RHWQFVAAIR
101: NQILLVEKEL NHSLIVEGKR PLRWVQLNDD ERDDLAVFLS GVPHKFQRPK HKNTELARNF KDVVTINKGK ECVEEFRAKE LYKSKVDEVH AKVVQLNGQT
201: GVLSSPDSGG AWKIVIANED TDKGSTEVGP EILNHGYSQS GILGNVESTS KLKLFKNNPW KAKNEELLPL RNGLSYYLDS KGIRWFAQGV NGFTERSKNC
301: FSHGGFQRNI LGSQQQMHFV HSLRIAFLLM LSIILVVPFV LYST

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.