CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010294.1-P	Field mustard	golgi	99.29	98.94
CDY03541	Canola	cytosol, golgi	90.04	90.04
CDY14469	Canola	cytosol, golgi	93.24	72.98
CDY28171	Canola	cytosol	67.26	67.74
AT4G30240.1	Thale cress	cytosol, golgi	71.53	67.0
CDX68636	Canola	cytosol	68.33	64.21
CDY49304	Canola	cytosol, golgi	56.58	58.46
CDY12994	Canola	cytosol, golgi	55.52	56.73
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	32.38	53.53
KRH02874	Soybean	cytosol	48.4	41.34
KRG90327	Soybean	cytosol	47.69	40.73
GSMUA_Achr2P04930_001	Banana	cytosol	38.08	31.1
CDY67977	Canola	cytosol, golgi, nucleus	30.96	29.79
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	29.89	28.97
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	37.37	28.93
CDX90104	Canola	cytosol, golgi, nucleus	29.54	28.82
GSMUA_Achr1P10310_001	Banana	cytosol	38.08	28.76
EES14780	Sorghum	cytosol, golgi, nucleus	35.23	27.73
CDY60275	Canola	cytosol	27.76	27.18
Zm00001d024418_P004	Maize	cytosol	33.81	25.75
Os08t0244100-01	Rice	cytosol, golgi, nucleus	30.96	24.1

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	GO:A0A078FM59	UniProt:A0A078FM59	EnsemblPlants:CDY14181	ProteinID:CDY14181
ProteinID:CDY14181.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00078738001	PFAM:PF09177	PANTHER:PTHR34949
PANTHER:PTHR34949:SF3	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0004EEB058
SEG:seg	:	:	:	:	:

Description

BnaA08g13120DBnaA08g13120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FM59]

Coordinates

chrLK032041:+:288..2143

Molecular Weight (calculated)

32761.6 Da

IEP (calculated)

5.817

GRAVY (calculated)

-0.581

Length

281 amino acids

Sequence
(BLAST)

001: MMVAKSFDLW QKDVFFSAAE EVQQSADTME SAYRLWVKEK REGQVSVESD HLCNELQAAL STAKWQLEEF ERAVRLSHGR CRDDTTLTRH KQFVSAIENQ
101: IHRVQSALSE NGEQPLRWVD LNKEERDDLA MFLSGSSQTS ESFSSESINL SRCYGERTPD CVIDIDDERG SPESAGNRNG ARRTWSSPDI SALRINVPLE
201: EEENKRYVSD IEATPKEKGY KPLFWMQRCR DYNLLFDRVR YYQRRFGVPF SRPVRIPFNR PVQLILSLAL LLFLLLLFRV Y

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.