CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14181	Canola	golgi	72.98	93.24
CDY03541	Canola	cytosol, golgi	71.03	90.75
AT4G30240.1	Thale cress	cytosol, golgi	55.43	66.33
CDY28171	Canola	cytosol	51.53	66.31
CDX68636	Canola	cytosol	52.92	63.55
CDY49304	Canola	cytosol, golgi	43.18	56.99
CDY12994	Canola	cytosol, golgi	42.62	55.64
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	24.51	51.76
KRH02874	Soybean	cytosol	37.33	40.73
KRG90327	Soybean	cytosol	36.77	40.12
GSMUA_Achr2P04930_001	Banana	cytosol	30.36	31.69
CDY67977	Canola	cytosol, golgi, nucleus	24.23	29.79
CDX90104	Canola	cytosol, golgi, nucleus	23.12	28.82
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	23.12	28.62
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	28.69	28.37
GSMUA_Achr1P10310_001	Banana	cytosol	29.25	28.23
EES14780	Sorghum	cytosol, golgi, nucleus	26.74	26.89
CDY60275	Canola	cytosol	21.45	26.83
Zm00001d024418_P004	Maize	cytosol	25.35	24.66
Os08t0244100-01	Rice	cytosol, golgi, nucleus	23.68	23.55

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	GO:A0A078FNJ7	UniProt:A0A078FNJ7	EnsemblPlants:CDY14469	ProteinID:CDY14469
ProteinID:CDY14469.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00079147001	PFAM:PF09177	PANTHER:PTHR34949
PANTHER:PTHR34949:SF3	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0004EDF733
SEG:seg	:	:	:	:	:

Description

BnaC03g21260DBnaC03g21260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNJ7]

Coordinates

chrLK032043:+:501133..503298

Molecular Weight (calculated)

41808.8 Da

IEP (calculated)

9.959

GRAVY (calculated)

-0.644

Length

359 amino acids

Sequence
(BLAST)

001: MMVAKSFDLW QKDVFFSAAE EVQQSADTME SACRLWIKEK RESGRVSVES DHLSNELQAA LSTAKWQLEE FGRAVRLSHG RCRDDTTLTR HKQFVSAIEN
101: QIHRVQSALS ENGEQPLRWV DLNKEERDDC WVRKRFRRGP TKLTSKSPKK KTEKLLRQIL FRNKLFLTKS FAEETRVIGQ ELEKSRYAAT ERVFRSVATF
201: HNDLAMFLSG FSQTSESFSS ESINLSRCCG ERTPVCVIDI DDERGSPESA SNRNGTRGTW SSPNVPDIRA LRINVPLEEE ENKRNVSQTE ATPKEKGYKP
301: LFWMQRCRDY NQLFDRVRYY QRRFGVPLNR PVRIPFNRPV QLILSLALLL SLLLLFRVY

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.