CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14181	Canola	golgi	90.04	90.04
CDY14469	Canola	cytosol, golgi	90.75	71.03
CDY28171	Canola	cytosol	66.9	67.38
AT4G30240.1	Thale cress	cytosol, golgi	70.82	66.33
CDX68636	Canola	cytosol	68.68	64.55
CDY49304	Canola	cytosol, golgi	55.87	57.72
CDY12994	Canola	cytosol, golgi	54.8	56.0
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	30.96	51.18
KRH02874	Soybean	cytosol	49.11	41.95
KRG90327	Soybean	cytosol	48.4	41.34
GSMUA_Achr2P04930_001	Banana	cytosol	36.65	29.94
CDY67977	Canola	cytosol, golgi, nucleus	30.25	29.11
CDX90104	Canola	cytosol, golgi, nucleus	29.54	28.82
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	29.54	28.62
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	36.3	28.1
GSMUA_Achr1P10310_001	Banana	cytosol	36.3	27.42
CDY60275	Canola	cytosol	27.4	26.83
EES14780	Sorghum	cytosol, golgi, nucleus	33.45	26.33
Zm00001d024418_P004	Maize	cytosol	32.74	24.93
Os08t0244100-01	Rice	cytosol, golgi, nucleus	30.61	23.82

Protein Annotations

EnsemblPlants:CDY03541	EnsemblPlantsGene:GSBRNA2T00116246001	Gene3D:1.20.58.90	GO:A0A078EQT3	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
ncoils:Coil	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	ProteinID:CDY03541	ProteinID:CDY03541.1
SEG:seg	SUPFAM:SSF47661	TMHMM:TMhelix	UniParc:UPI0004EE7E86	MapMan:35.2	:

Description

BnaC03g68000D

Coordinates

chrLK031944:+:90708..92473

Molecular Weight (calculated)

32837.8 Da

IEP (calculated)

6.682

GRAVY (calculated)

-0.609

Length

281 amino acids

Sequence
(BLAST)

001: MMVAKSFDLW QKDVLFSAAE EVQQSADTME SAYRLWIKEK RESGRVYVES DHLCNELQAA LSTAKWQLEE FERAVRLSHG RCRDDTTLTR HKHFVSAVEN
101: QIHRVQSALS ENGEQPLRWV DLNKEERDDL AMFLSGSSQT SESFSSESIN LSRCYGDCVI DIDDERGSPE SAGNRNGTRR TWSSPNVPDI SALRINVPLE
201: EEENKRYVSQ TEATPKEKGY KPLFWMQRFR DYNQLFDRVR YYQRRFGVPL NRPVRIPFNR PVQLILSLAL LLFLLLLFRV Y

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.