CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024418_P004	Maize	cytosol	78.71	76.15
Os08t0244100-01	Rice	cytosol, golgi, nucleus	65.27	64.54
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	21.57	45.29
GSMUA_Achr2P04930_001	Banana	cytosol	37.25	38.66
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	37.82	37.19
CDY49304	Canola	cytosol, golgi	27.17	35.66
CDY14181	Canola	golgi	27.73	35.23
Bra010294.1-P	Field mustard	golgi	27.73	35.11
CDY12994	Canola	cytosol, golgi	26.61	34.55
GSMUA_Achr1P10310_001	Banana	cytosol	35.29	33.87
CDY03541	Canola	cytosol, golgi	26.33	33.45
AT4G30240.1	Thale cress	cytosol, golgi	27.45	32.67
CDY28171	Canola	cytosol	25.21	32.26
KRG90327	Soybean	cytosol	28.29	30.7
KRH02874	Soybean	cytosol	28.29	30.7
EER92668	Sorghum	cytosol	30.25	30.08
AT2G18860.1	Thale cress	cytosol	24.65	29.73
CDX68636	Canola	cytosol	24.37	29.1
Bra011176.1-P	Field mustard	cytosol	25.21	27.36
CDY14469	Canola	cytosol, golgi	26.89	26.74
Bra038827.1-P	Field mustard	cytosol, plasma membrane	27.45	23.33
EES19612	Sorghum	cytosol	11.76	12.92

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	EntrezGene:8073250	UniProt:C5YJI4	EnsemblPlants:EES14780	ProteinID:EES14780
ProteinID:EES14780.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048193	GO:GO:0048278	PFAM:PF09177
PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	InterPro:SNARE	EnsemblPlantsGene:SORBI_3007G089500	SUPFAM:SSF47661	unigene:Sbi.8951
InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0001A87F3B	RefSeq:XP_002445285.1	:	:

Description

hypothetical protein

Coordinates

chr7:-:12620646..12626371

Molecular Weight (calculated)

40715.7 Da

IEP (calculated)

5.211

GRAVY (calculated)

-0.636

Length

357 amino acids

Sequence
(BLAST)

001: MAASGGLEQW QKDGFFQAAE EVQESADLME SVYRTWMRER CDGSSSDEVD DLQRELQTAL GTAKWQLEQF ERAVSSCNDK YSLEEGTLAR RRQFVVAIED
101: QISRVEKEIN GSLMDNGRQG LNWVKLDDEE RDDLVAFLSA PAEFYSEMKR TDSSNHAPSR QKNVPNDQSD PTLIIKDIYE VPRREIFTVK SDVCGLAEEL
201: HGLRRNMSSG NDHWKIDIGS EGDDDRKLSP DANGVQATSQ TTALSSIRRG TESLTRVRWF WNSLWKPKSD EHRTVRYGIS NNLDLRVLSL LTQRFNGLAE
301: RSRNYLTSWK ENSRISGRMG GLHIQGQQQN IQFGRSIRIT LLLVLSIFLI VPFLVSA

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.