CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28171	Canola	cytosol	83.95	89.96
CDY03541	Canola	cytosol, golgi	64.55	68.68
CDY14181	Canola	golgi	64.21	68.33
AT4G30240.1	Thale cress	cytosol, golgi	67.22	67.0
CDY49304	Canola	cytosol, golgi	50.84	55.88
CDY12994	Canola	cytosol, golgi	50.17	54.55
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	30.1	52.94
CDY14469	Canola	cytosol, golgi	63.55	52.92
KRH02874	Soybean	cytosol	43.81	39.82
KRG90327	Soybean	cytosol	43.14	39.21
GSMUA_Achr2P04930_001	Banana	cytosol	35.79	31.1
CDX90104	Canola	cytosol, golgi, nucleus	28.76	29.86
CDY67977	Canola	cytosol, golgi, nucleus	29.1	29.79
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	28.43	29.31
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	34.78	28.65
GSMUA_Achr1P10310_001	Banana	cytosol	35.12	28.23
CDY60275	Canola	cytosol	27.09	28.22
EES14780	Sorghum	cytosol, golgi, nucleus	29.1	24.37
Zm00001d024418_P004	Maize	cytosol	29.1	23.58
Os08t0244100-01	Rice	cytosol, golgi, nucleus	27.42	22.71

Protein Annotations

EnsemblPlants:CDX68636	EnsemblPlantsGene:GSBRNA2T00130291001	Gene3D:1.20.58.90	GO:A0A078BUX7	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N
ncoils:Coil	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	ProteinID:CDX68636	ProteinID:CDX68636.1
SEG:seg	SUPFAM:SSF47661	TMHMM:TMhelix	UniParc:UPI0004EDB491	MapMan:35.2	:

Description

BnaC01g08170D

Coordinates

chrLK031789:-:426000..427894

Molecular Weight (calculated)

34307.7 Da

IEP (calculated)

5.659

GRAVY (calculated)

-0.385

Length

299 amino acids

Sequence
(BLAST)

001: MIVANSFDLW QKDVFLSAAE EVQESADTME SAYRLWIKEK RQGRVTVESD QLCIELQAAL STAKWQLEEF ERAVRLSHGH CRDDTTLTRH KQFVNAIENQ
101: IYRVQTALQE ALTENGKQHP LRLVDLNKEE RDDLAMFLSG SSLTSESSIN FRDSSTSSLG GFNSCVIDID EGGSPESADA MIRVQQADKR FGTRRTWSSP
201: NVPNVTALRV NVPVDAEEEE ERKRLVFDIE DTPKEKGSKP LFGYNLIFDR VRYHQRRFRV PFSRPVQLIL SFTLILFLLC ESHLLLLLMS YTPHHTIVL

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.