CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12994	Canola	cytosol, golgi	94.85	93.82
AT2G18860.1	Thale cress	cytosol	76.47	70.27
CDY14181	Canola	golgi	58.46	56.58
CDY03541	Canola	cytosol, golgi	57.72	55.87
Bra038827.1-P	Field mustard	cytosol, plasma membrane	84.56	54.76
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	34.19	54.71
CDY28171	Canola	cytosol	55.15	53.76
CDX68636	Canola	cytosol	55.88	50.84
CDY14469	Canola	cytosol, golgi	56.99	43.18
KRG90327	Soybean	cytosol	50.74	41.95
KRH02874	Soybean	cytosol	49.26	40.73
GSMUA_Achr2P04930_001	Banana	cytosol	41.54	32.85
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	41.18	30.85
CDY67977	Canola	cytosol, golgi, nucleus	30.88	28.77
GSMUA_Achr1P10310_001	Banana	cytosol	38.97	28.49
CDX90104	Canola	cytosol, golgi, nucleus	30.15	28.47
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	29.78	27.93
EES14780	Sorghum	cytosol, golgi, nucleus	35.66	27.17
Zm00001d024418_P004	Maize	cytosol	36.76	27.1
CDY60275	Canola	cytosol	27.94	26.48
Os08t0244100-01	Rice	cytosol, golgi, nucleus	33.46	25.21

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	GO:A0A078IIU6	UniProt:A0A078IIU6	EnsemblPlants:CDY49304	ProteinID:CDY49304
ProteinID:CDY49304.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00092729001	PFAM:PF09177	PANTHER:PTHR34949
PANTHER:PTHR34949:SF3	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0004EE1228
SEG:seg	:	:	:	:	:

Description

BnaA07g01630DBnaA07g01630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIU6]

Coordinates

chrLK032824:-:22688..25343

Molecular Weight (calculated)

30980.6 Da

IEP (calculated)

5.099

GRAVY (calculated)

-0.443

Length

272 amino acids

Sequence
(BLAST)

001: MMVVNSFDLW QKDVFFSAAE EVQKSADIME SAYRLWIREK KDDIFKELQA ALGTAKWQLE EFEKAVRLSH RQCGDDSTST TRHKQFVAAI ENQIHRVEAS
101: LQETYSENGK EPLRWVNLSE EERDDLAMFL SGSSLTSHSF SSESSIKSNV AEVTNDVNGS ECVIDIQESA KPRNAEKTAG TRRTWSSPDF SSLRIIVPGD
201: NEQEEEKLVT QIESTPKVKG TKPVLWMQRL PDHTQLGCFQ NPIRLSFNHP IKLTVSLMLM VFLLLPFVVY SS

Best Arabidopsis Sequence Match ( AT2G18860.1 )
(BLAST)

001: MMVVNSFDLW QKDVFFSAAE EVQKSTDIME SAYRLWIREK KDEICKELQA ALGTAKWQLE EFEKAVRLSH KRCGDNDSSS TRHKQFVTAI ENQIHRVETS
101: LQEAYSENGK KPLRWVDLNE EERDDLAMFL SGSSRTSQSF SGESSIKSRE STNSSLVENV MEVSAKVTFK KAKVYGDGSE CVIDIEERVT PGQAEKSVGL
201: RRIWSSPNFN SLRIIVPGGD NEEEKETLVA QIEATPKVKG TKSVLWMQRL PDHNQLFDKT GCFQNPIRLP FNHPIKFIVS LLLMVFLLLP FVVYLS

Arabidopsis Description

At2g18860 [Source:UniProtKB/TrEMBL;Acc:Q501A1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.