CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49304	Canola	cytosol, golgi	93.82	94.85
AT2G18860.1	Thale cress	cytosol	76.0	70.61
CDY14181	Canola	golgi	56.73	55.52
CDY03541	Canola	cytosol, golgi	56.0	54.8
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	33.45	54.12
Bra038827.1-P	Field mustard	cytosol, plasma membrane	81.09	53.1
CDY28171	Canola	cytosol	52.36	51.61
CDX68636	Canola	cytosol	54.55	50.17
CDY14469	Canola	cytosol, golgi	55.64	42.62
KRG90327	Soybean	cytosol	49.09	41.03
KRH02874	Soybean	cytosol	48.0	40.12
GSMUA_Achr2P04930_001	Banana	cytosol	40.73	32.56
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	41.45	31.41
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	31.27	29.66
CDY67977	Canola	cytosol, golgi, nucleus	31.27	29.45
CDX90104	Canola	cytosol, golgi, nucleus	30.55	29.17
GSMUA_Achr1P10310_001	Banana	cytosol	38.18	28.23
CDY60275	Canola	cytosol	29.45	28.22
EES14780	Sorghum	cytosol, golgi, nucleus	34.55	26.61
Zm00001d024418_P004	Maize	cytosol	35.64	26.56
Os08t0244100-01	Rice	cytosol, golgi, nucleus	32.36	24.65

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	GO:A0A078FJ44	UniProt:A0A078FJ44	EnsemblPlants:CDY12994	ProteinID:CDY12994
ProteinID:CDY12994.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00070753001	PFAM:PF09177	PANTHER:PTHR34949
PANTHER:PTHR34949:SF3	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0004EF006D
SEG:seg	:	:	:	:	:

Description

BnaC07g02930DBnaC07g02930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ44]

Coordinates

chrLK032030:-:13368..16014

Molecular Weight (calculated)

31242.0 Da

IEP (calculated)

5.241

GRAVY (calculated)

-0.423

Length

275 amino acids

Sequence
(BLAST)

001: MTTMMVVNSF DLWQKDVFFS AAEEVQKSAD IMESAYRLWI RGKKDDIFKE LQAALGTAKW QLEEFEKAVR LSHRQCGDDS TSTTRHKQFV AAIENQIHRV
101: EASLQETYSE NGKEPLRWVN LSEEERDDLA MFLSGSSLTS HSFSSESSIK SNVAEVTNDV NGSECVIDIQ ESAKPRNAEK TAGTRRTWSS PDFSSLRIIV
201: PGDNEQEEEK LVTQIESTPK VKGTKPVLWM QRLPDHTQIG CFQNPIRLSF NHPIKLTVSL MLMVFLLLPF VVYSS

Best Arabidopsis Sequence Match ( AT2G18860.1 )
(BLAST)

001: MMVVNSFDLW QKDVFFSAAE EVQKSTDIME SAYRLWIREK KDEICKELQA ALGTAKWQLE EFEKAVRLSH KRCGDNDSSS TRHKQFVTAI ENQIHRVETS
101: LQEAYSENGK KPLRWVDLNE EERDDLAMFL SGSSRTSQSF SGESSIKSRE STNSSLVENV MEVSAKVTFK KAKVYGDGSE CVIDIEERVT PGQAEKSVGL
201: RRIWSSPNFN SLRIIVPGGD NEEEKETLVA QIEATPKVKG TKSVLWMQRL PDHNQLFDKT GCFQNPIRLP FNHPIKFIVS LLLMVFLLLP FVVYLS

Arabidopsis Description

At2g18860 [Source:UniProtKB/TrEMBL;Acc:Q501A1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.