Factsheet for GSMUA_Achr1P10310_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, plastid
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04930_001	Banana	cytosol	52.42	56.69
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	23.12	50.59
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	44.62	45.73
KRG90327	Soybean	cytosol	34.95	39.51
CDY49304	Canola	cytosol, golgi	28.49	38.97
KRH02874	Soybean	cytosol	33.87	38.3
CDY12994	Canola	cytosol, golgi	28.23	38.18
CDY14181	Canola	golgi	28.76	38.08
CDY28171	Canola	cytosol	28.49	37.99
Bra010294.1-P	Field mustard	golgi	28.76	37.94
AT4G30240.1	Thale cress	cytosol, golgi	30.38	37.67
CDY03541	Canola	cytosol, golgi	27.42	36.3
Os08t0244100-01	Rice	cytosol, golgi, nucleus	34.68	35.73
Zm00001d024418_P004	Maize	cytosol	35.22	35.5
AT2G18860.1	Thale cress	cytosol	28.23	35.47
GSMUA_Achr10P...	Banana	cytosol	29.57	35.37
EES14780	Sorghum	cytosol, golgi, nucleus	33.87	35.29
CDX68636	Canola	cytosol	28.23	35.12
Bra011176.1-P	Field mustard	cytosol	29.84	33.74
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	30.11	31.28
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	28.49	30.64
CDY14469	Canola	cytosol, golgi	28.23	29.25
Bra038827.1-P	Field mustard	cytosol, plasma membrane	29.57	26.19
GSMUA_AchrUn_...	Banana	nucleus	14.78	13.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P10310_001	EnsemblPlants:GSMUA_Achr1T10310_001	EnsemblPlantsGene:GSMUA_Achr1G10310_001	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SUPFAM:SSF47661	TMHMM:TMhelix
UniParc:UPI000295E14C	UniProt:M0RYP0	MapMan:35.2	:	:	:

Description

Putative syntaxin 6, N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G10310_001]

Coordinates

chr1:+:7800576..7802860

Molecular Weight (calculated)

42309.9 Da

IEP (calculated)

7.326

GRAVY (calculated)

-0.590

Length

372 amino acids

Sequence
(BLAST)

001: MSVGGSFQQW EKDVFFSAAE EVQESADVME SIYRMWTRNA RDGFDLEASY EFRRELQTAL GTAKWQLEEF EKAVKLSHGD NSSYENAITR HRQFVSAIGN
101: QISRVEKGLN DSLIEEGKPP LCWVQLDKEE RDDLANFLSG VSRDSHGAKD VAHGNPDLMK SFTGTVTVNK DKRYVVEVAA KEPSEEKDDS LLVAPQQPYG
201: QTSVLSLPDI GAWKIVIADE DTDKRSAEVR PDMPNHEYGQ TGSLRSVEST SKLQWFRNNL WKAKNEEPHF LRHGLSYYLD LKGVTRFAQG INGLTGRSRN
301: CHSNSGQRLK RSHSQTFVGK VGRFQRPTEG PQHCMRFMRS VWMTFLLSMS IVLIGKFDLW IVRTGCLFVK VN

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.