Factsheet for Bra010294.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 3
cytosol 1
golgi 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14181	Canola	golgi	98.94	99.29
AT4G30240.1	Thale cress	cytosol, golgi	71.28	67.0
Bra011176.1-P	Field mustard	cytosol	68.79	58.97
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	32.27	53.53
KRH02874	Soybean	cytosol	47.87	41.03
KRG90327	Soybean	cytosol	47.52	40.73
Bra038827.1-P	Field mustard	cytosol, plasma membrane	53.55	35.95
GSMUA_Achr2P04930_001	Banana	cytosol	37.94	31.1
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	37.23	28.93
GSMUA_Achr1P10310_001	Banana	cytosol	37.94	28.76
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	29.08	28.47
EES14780	Sorghum	cytosol, golgi, nucleus	35.11	27.73
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	27.66	27.18
Zm00001d024418_P004	Maize	cytosol	33.69	25.75
Os08t0244100-01	Rice	cytosol, golgi, nucleus	31.21	24.38

Protein Annotations

EnsemblPlants:Bra010294.1	EnsemblPlants:Bra010294.1-P	EnsemblPlantsGene:Bra010294	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	ncoils:Coil	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg
SUPFAM:SSF47661	TMHMM:TMhelix	UniParc:UPI00025470B5	UniProt:M4D1E5	MapMan:35.2	:

Description

AT4G30240 (E=3e-061) | protein binding

Coordinates

chrA08:+:13698374..13699651

Molecular Weight (calculated)

32876.8 Da

IEP (calculated)

6.174

GRAVY (calculated)

-0.585

Length

282 amino acids

Sequence
(BLAST)

001: MMVAKSFDLW QKDVFFSAAE EVQQSADTME SAYRLWVKEK RESGRVSVES DHLCNELQAA LSTAKWQLEE FERAVRLSHG RCRDDTTLTR HKQFVSAIEN
101: QIHRVQSALS ENGEQPLRWV DLNKEERDDL AMFLSGSSQT SESFSSESIN LSRCYGERTP DCVIDIDDER GSPESAGNRN GARRTWSSPD ISALRINVPL
201: EEEENKRYVS DIEATPKEKG YKPLFWMQRC RDYNLLFDRV RYYQRRFGVP FSRPVRIPFN RPVQLILSLA LLLFLLLLFR VY

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.