Factsheet for GSMUA_AchrUn_randomP04610_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	24.24	51.76
GSMUA_Achr2P04930_001	Banana	cytosol	45.45	47.97
GSMUA_Achr1P10310_001	Banana	cytosol	45.73	44.62
CDY12994	Canola	cytosol, golgi	31.41	41.45
CDY49304	Canola	cytosol, golgi	30.85	41.18
KRG90327	Soybean	cytosol	37.19	41.03
Os08t0244100-01	Rice	cytosol, golgi, nucleus	39.39	39.61
AT4G30240.1	Thale cress	cytosol, golgi	31.68	38.33
KRH02874	Soybean	cytosol	34.44	37.99
AT2G18860.1	Thale cress	cytosol	30.85	37.84
EES14780	Sorghum	cytosol, golgi, nucleus	37.19	37.82
CDY14181	Canola	golgi	28.93	37.37
CDY28171	Canola	cytosol	28.65	37.28
Bra010294.1-P	Field mustard	golgi	28.93	37.23
Zm00001d024418_P004	Maize	cytosol	37.19	36.59
CDY03541	Canola	cytosol, golgi	28.1	36.3
GSMUA_Achr10P...	Banana	cytosol	30.85	36.01
CDX68636	Canola	cytosol	28.65	34.78
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	31.13	32.66
Bra011176.1-P	Field mustard	cytosol	28.93	31.91
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	31.41	31.84
CDY14469	Canola	cytosol, golgi	28.37	28.69
Bra038827.1-P	Field mustard	cytosol, plasma membrane	31.41	27.14
GSMUA_AchrUn_...	Banana	nucleus	15.15	13.0

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP04610_001	EnsemblPlants:GSMUA_AchrUn_randomT04610_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG04610_001	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SUPFAM:SSF47661	TMHMM:TMhelix
UniParc:UPI00029600C5	UniProt:M0U6C3	MapMan:35.2	:	:	:

Description

Putative syntaxin 6, N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04610_001]

Coordinates

chrchrUn_random:-:18356989..18360170

Molecular Weight (calculated)

41168.8 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.468

Length

363 amino acids

Sequence
(BLAST)

001: MAVASSFDQW QKDVFFSAAE EVQESADVME SLFRMWMRDL KDSEAPDELH GELHTALGTA KWQLEEFEKA VRLRHRSYPS EKNAITRHKQ FVAAIAEQIS
101: RVEKALREEG KQPLRWVQLD AEEQDDLALF LSEVPQNMQE TRDDVKGSDC DNCSSQAIIR PESVRGLKDK IIGSSDGRHV VEAATKEPLG RKGNEGCADV
201: EQLHSLRRAS SLLDVGAWKI VVADDVGADN KAVEIRSEMP NHASNLCGLL KTVESASKLR WFRNSFWKAK SEDLQLRHRL QFRAVSRLAQ GISGLSERSR
301: NCFDSFKEEY KLSSGQQFSG RLGGFQRHIP GSQYYMQFGR SLRITFLLVL SIILIVPFVL YST

Best Arabidopsis Sequence Match ( AT2G18860.3 )
(BLAST)

001: MMVVNSFDLW QKDVFFSAAE EVQKSTDIME SAYRLWIREK KDEICKELQA ALGTAKWQLE EFEKAVRLSH KRCGDNDSSS TRHKQFVTAI ENQIHRVETS
101: LQEAYSENGK KPLRWVDLNE EERDDLAMFL SGSSRTSQSF SGESSIKSRE STNSSLVENV MEVSAKVTFK KAKVYGDGSE CVIDIEERVT PGQAEKSVGL
201: RRIWSSPNFN SLRIIVPGGD NEEEKETLVA QIEATPKVKG TKSVLWMQRL PDHNQVSVLI YKL

Arabidopsis Description

At2g18860 [Source:UniProtKB/TrEMBL;Acc:Q501A1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.