Factsheet for Bra011176.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28171	Canola	cytosol	78.42	92.47
Bra010294.1-P	Field mustard	golgi	58.97	68.79
AT4G30240.1	Thale cress	cytosol, golgi	60.49	66.33
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	27.96	54.12
KRH02874	Soybean	cytosol	41.95	41.95
KRG90327	Soybean	cytosol	40.73	40.73
Bra038827.1-P	Field mustard	cytosol, plasma membrane	46.81	36.67
GSMUA_Achr2P04930_001	Banana	cytosol	31.91	30.52
GSMUA_Achr1P10310_001	Banana	cytosol	33.74	29.84
GSMUA_AchrUn_...	Banana	cytosol, golgi, nucleus	31.91	28.93
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	24.92	28.47
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	24.32	27.87
EES14780	Sorghum	cytosol, golgi, nucleus	27.36	25.21
Zm00001d024418_P004	Maize	cytosol	27.66	24.66
Os08t0244100-01	Rice	cytosol, golgi, nucleus	24.92	22.71

Protein Annotations

EnsemblPlants:Bra011176.1	EnsemblPlants:Bra011176.1-P	EnsemblPlantsGene:Bra011176	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	ncoils:Coil	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg
SUPFAM:SSF47661	TMHMM:TMhelix	UniParc:UPI0002546F81	UniProt:M4D3X2	MapMan:35.2	:

Description

AT2G18860 (E=9e-063) | syntaxin family protein

Coordinates

chrA01:+:3472895..3474257

Molecular Weight (calculated)

37657.8 Da

IEP (calculated)

5.767

GRAVY (calculated)

-0.286

Length

329 amino acids

Sequence
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADAME SAYRVWVKEK RQGRVTVESD QLCIELQAAL STAKWQLEEF ERAVRLSHGH CRDDTTLTRH KQFVNAIENQ
101: IYRVHCALQE ALTENGKQKP LRLVDLNKEE RDDLAMFLSG SSLTSESSIS LRDSSTSSCV IDIDEGGSPE SADAIIRVQQ ADKRFGTRRT WSSPNVPNVT
201: ALRVSVPVDV EVEEKRKRLV FDVEDTPKEK GSKPMFGYNL IFDRVRCYQR RFRVPYSRPV QLVLSFTLIL FLLCESHLLL LIMSYTYTTP LFFNSTNLFP
301: FCSNVWSLLV LRTLNCGFGN SQESLTGEY

Best Arabidopsis Sequence Match ( AT4G30240.1 )
(BLAST)

001: MMVANSFDLW QKDVFFSAAE EVQESADIME SAYRLWFKEK RDGRVSVESD ELCKELQAAL STAKWQLEEF ERAVSLSHGN CRDDTTLTRH KQFVTAIENQ
101: IYQVESTLLE SLSENGKQPL RWVDLNKEER DDLAMFLSGS SQTSESLNSD SINLRDSSTS SVAENPRGIN GRREGRCYGD SPDCVIDIDD IGSPESADKK
201: GGTRRTWSSP NVPNISALRI NVPVNAKEEE REKFLSHIED TPKEKGAKPM FWLQRCRDYN QLFDRVKVYQ RRFRVPLSRP IKLILSLTLI LILLLFILRT

Arabidopsis Description

AT4g30240/F9N11_90 [Source:UniProtKB/TrEMBL;Acc:Q944G8]
SUBAcon: [golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.