Factsheet for Bra030059.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
golgi 1
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra030540.1-P
Bra033415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	Bra030540.1-P	AT1G03630.1	21798944
AT1G27700.1	Bra033415.1-P	AT1G03630.1	21798944
AT1G27700.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G27700.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G27700.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G27700.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G27700.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60275	Canola	cytosol	98.95	98.95
AT1G27700.1	Thale cress	cytosol	77.7	75.08
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	75.26	75.0
VIT_18s0001g09380.t01	Wine grape	nucleus	53.66	44.64
KRH05610	Soybean	nucleus	48.08	41.32
PGSC0003DMT400030171	Potato	nucleus	48.08	40.47
KRH61384	Soybean	cytosol	47.39	40.12
Solyc12g088440.1.1	Tomato	nucleus	47.74	40.06
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	47.04	39.94
PGSC0003DMT400055415	Potato	cytosol	46.69	38.62
GSMUA_Achr10P...	Banana	cytosol	38.33	35.37
Os10t0343100-01	Rice	cytosol	44.6	34.88
KRH52070	Soybean	cytosol, nucleus, peroxisome	46.69	34.45
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	41.46	34.39
EER92668	Sorghum	cytosol	42.86	34.26
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	42.51	34.08
Os03t0207200-01	Rice	cytosol	41.46	32.69
TraesCS4D01G254800.1	Wheat	cytosol	40.42	32.58
Zm00001d028054_P002	Maize	cytosol	43.55	32.22
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	39.02	31.46
TraesCS4B01G255000.1	Wheat	cytosol	38.68	31.18
Bra010294.1-P	Field mustard	golgi	27.18	27.66
HORVU4Hr1G069400.3	Barley	plastid	39.02	25.57
Bra011176.1-P	Field mustard	cytosol	27.87	24.32
Bra038827.1-P	Field mustard	cytosol, plasma membrane	26.48	18.1

Protein Annotations

EnsemblPlants:Bra030059.1	EnsemblPlants:Bra030059.1-P	EnsemblPlantsGene:Bra030059	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE
InterPro:Syntaxin-6_N	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg	SUPFAM:SSF47661
TMHMM:TMhelix	UniParc:UPI000254113E	UniProt:M4EMN9	MapMan:35.2	:	:

Description

AT1G27700 (E=2e-120) | protein binding

Coordinates

chrA07:+:6903934..6905016

Molecular Weight (calculated)

33137.9 Da

IEP (calculated)

7.005

GRAVY (calculated)

-0.733

Length

287 amino acids

Sequence
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWRIHGKQ GSSNVWDSEQ LHRDLHAALG TTKWQLDEFQ RAVQSSYHNR LSLSDDTRDR HQEFTFAMEA
101: QVAKIEKSLK EAARSDGKGT PRWVRLDEDD RNELALFLTG PSESDRKQHR RAASATINIG AWNIDEKPSG EPLVRKVPSV SGFLNHMEPK NCIRKWKALD
201: RQGDSDAAAL LPIQTNQQVV NGCFERDKSC VECEEDCYDK QLHGWYGALQ RQLQRSQYQM RYSKSLQATI WILLLVFLIV VVAVHRM

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.