Factsheet for TraesCS4A01G049700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G171000.1
TraesCS1A01G346800.3
TraesCS1B01G186300.1
TraesCS1B01G360800.1
TraesCS1D01G168700.2
TraesCS1D01G349700.1
TraesCS2A01G590600.1
TraesCS2B01G593000.1
TraesCS2D01G563600.1
TraesCS2D01G563700.1
TraesCS3A01G151200.1
TraesCS3A01G278800.1
TraesCS3B01G178100.1
TraesCS3B01G313000.1
TraesCS3D01G159100.1
TraesCS3D01G279100.1
TraesCS7A01G341800.1
TraesCS7B01G241100.1
TraesCS7D01G337800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	TraesCS1A01G171000.1	AT1G03630.1	21798944
AT1G27700.1	TraesCS1B01G186300.1	AT1G03630.1	21798944
AT1G27700.1	TraesCS1D01G168700.2	AT1G03630.1	21798944
AT1G27700.1	TraesCS2A01G590600.1	AT1G03630.1	21798944
AT1G27700.1	TraesCS2B01G593000.1	AT1G03630.1	21798944
AT1G27700.1	TraesCS2D01G563600.1	AT1G03630.1	21798944
AT1G27700.1	TraesCS2D01G563700.1	AT1G03630.1	21798944
AT1G27700.1	TraesCS1A01G346800.3	AT5G41600.1	21798944
AT1G27700.1	TraesCS1B01G360800.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS1D01G349700.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS3A01G151200.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS3A01G278800.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS3B01G178100.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS3B01G313000.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS3D01G159100.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS3D01G279100.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS7A01G341800.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS7B01G241100.1	AT5G41600.1	21798944
AT1G27700.1	TraesCS7D01G337800.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G254800.1	Wheat	cytosol	97.19	97.19
TraesCS4B01G255000.1	Wheat	cytosol	96.35	96.35
HORVU4Hr1G069400.3	Barley	plastid	93.26	75.8
EER92668	Sorghum	cytosol	71.63	71.03
Os03t0207200-01	Rice	cytosol	66.01	64.56
Zm00001d028054_P002	Maize	cytosol	66.85	61.34
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	45.22	44.97
GSMUA_Achr10P...	Banana	cytosol	37.64	43.09
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	31.46	39.02
CDY60275	Canola	cytosol	31.46	39.02
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	31.46	38.62
KRH61384	Soybean	cytosol	35.67	37.46
KRH05610	Soybean	nucleus	34.83	37.13
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	33.99	35.8
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	28.65	35.42
PGSC0003DMT400055415	Potato	cytosol	34.27	35.16
VIT_18s0001g09380.t01	Wine grape	nucleus	33.99	35.07
CDX90104	Canola	cytosol, golgi, nucleus	28.37	35.07
CDY67977	Canola	cytosol, golgi, nucleus	28.65	34.93
AT1G27700.1	Thale cress	cytosol	28.93	34.68
PGSC0003DMT400030171	Potato	nucleus	32.3	33.72
Solyc12g088440.1.1	Tomato	nucleus	32.3	33.63
KRH52070	Soybean	cytosol, nucleus, peroxisome	36.24	33.16
TraesCS1A01G276400.1	Wheat	cytosol, golgi, nucleus	11.24	11.94

Protein Annotations

EnsemblPlants:TraesCS4A01G049700.1	EnsemblPlantsGene:TraesCS4A01G049700	Gene3D:1.20.58.90	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0048193	InterPro:SNARE	InterPro:Syntaxin-6_N	PANTHER:PTHR34949
PANTHER:PTHR34949:SF3	PFAM:PF09177	SEG:seg	SUPFAM:SSF47661	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr4A:-:40442595..40444517

Molecular Weight (calculated)

39016.9 Da

IEP (calculated)

7.725

GRAVY (calculated)

-0.409

Length

356 amino acids

Sequence
(BLAST)

001: MATSFDRWEK DPFFLAAEEV QESADRMESV YKIWVQERSG GDSALGGEVG AVELRRELHT ALGTAKWQLD ELERAIRSND EVVSAGKDTR ALHSNFVAAI
101: GYRILEVENN LNASNVAEGR GTLSWIHLDE SERDDLAAFL SATPPQHQDK VVTIPSAGDI QVGSNPTRVR KNISADSSND SSGSADLSSA RAKEDAHRGH
201: RRSVSASADI GSSPMSFPNE REGAAEQSSL GPHRAPLLNI VKACGLPSAL KPKPAIKYKK GAVRWAHADK QDLEAAIPLT NPQLGQGLDG YSERSIGYLN
301: TCDGVTYNKK LYGWLGALRK KLQRSQYQIR YGRPAQLILF ALAVLIIFVF VFKTIW

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.