Factsheet for VIT_18s0001g09380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00640.t01
VIT_06s0080g00970.t01
VIT_07s0031g02730.t01
VIT_10s0003g01830.t01
VIT_12s0059g00270.t01
VIT_15s0046g01760.t01
VIT_19s0014g03160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	VIT_12s0059g00270.t01	AT1G03630.1	21798944
AT1G27700.1	VIT_19s0014g03160.t01	AT1G03630.1	21798944
AT1G27700.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G27700.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT1G27700.1	VIT_02s0025g00640.t01	AT5G41600.1	21798944
AT1G27700.1	VIT_07s0031g02730.t01	AT5G41600.1	21798944
AT1G27700.1	VIT_15s0046g01760.t01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61384	Soybean	cytosol	55.36	56.34
AT1G27700.1	Thale cress	cytosol	46.67	54.21
CDY60275	Canola	cytosol	44.93	54.01
KRH05610	Soybean	nucleus	52.17	53.89
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	44.93	53.82
CDX90104	Canola	cytosol, golgi, nucleus	44.93	53.82
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	44.64	53.66
CDY67977	Canola	cytosol, golgi, nucleus	45.22	53.42
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	44.35	52.76
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	51.59	52.66
PGSC0003DMT400055415	Potato	cytosol	51.88	51.59
PGSC0003DMT400030171	Potato	nucleus	50.72	51.32
Solyc12g088440.1.1	Tomato	nucleus	50.14	50.58
KRH52070	Soybean	cytosol, nucleus, peroxisome	53.91	47.81
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	42.61	42.49
GSMUA_Achr10P...	Banana	cytosol	37.97	42.12
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	43.19	41.62
VIT_11s0052g00960.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	19.71	40.0
Os10t0343100-01	Rice	cytosol	40.29	37.87
EER92668	Sorghum	cytosol	37.39	35.93
TraesCS4D01G254800.1	Wheat	cytosol	35.65	34.55
Zm00001d028054_P002	Maize	cytosol	38.26	34.02
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	35.07	33.99
TraesCS4B01G255000.1	Wheat	cytosol	35.07	33.99
Os03t0207200-01	Rice	cytosol	35.65	33.79
HORVU4Hr1G069400.3	Barley	plastid	36.81	29.0
VIT_08s0007g03310.t01	Wine grape	cytosol	17.1	13.23

Protein Annotations

Gene3D:1.20.58.90	EntrezGene:100262567	MapMan:35.2	EMBL:AM451154	ProteinID:CAN63258	ProteinID:CAN63258.1
ProteinID:CBI19427	ProteinID:CBI19427.3	UniProt:E0CP49	EMBL:FN595227	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	GO:GO:0048193	PFAM:PF09177	PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI0001BE126D	ArrayExpress:VIT_18s0001g09380	EnsemblPlantsGene:VIT_18s0001g09380
EnsemblPlants:VIT_18s0001g09380.t01	RefSeq:XP_010664530.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:7867312..7871130

Molecular Weight (calculated)

39012.7 Da

IEP (calculated)

4.813

GRAVY (calculated)

-0.603

Length

345 amino acids

Sequence
(BLAST)

001: MGSDFERWEK DPFFSAAEEV QESADRMAST YRTWIHSSKE PSKMWNSEQL QRDLHTALGT TKWQLEEFER AVGSTYEDSS ADDARDRHCQ FIGAIGNQVS
101: TIESSLQESA ASEGRSSIPW VRLDEGERDE LALFLTGPAL SQDKTTVKIM GMDNETVNPK EVDEESVPEC PKNSCYLTEW GSLESREEKL TGHRRTASAN
201: ADIGAWKIAV ADDGVQQSLF NGQPYVPPRK VPSVSGLLCT MDCSSKLKWP KNGFRKLKVM DRHQEGDSAF LRPQISPGIS TCYEKGKSCL DGCDDCYDKQ
301: LYGWYGAMQR QLQRSQYQMQ YSRPIQVTFW IALLCLIVLI ALYAM

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.