CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH22653
KRH26074
KRH26664
KRH27209
KRH41254
KRH42923
KRH42926
KRH45251
KRH55334
KRH59035
KRH59036
KRH59988

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	KRH26074	AT1G03630.1	21798944
AT1G27700.1	KRH27209	AT1G03630.1	21798944
AT1G27700.1	KRH55334	AT1G03630.1	21798944
AT1G27700.1	KRH11076	AT4G19030.1	21798944
AT1G27700.1	KRH21197	AT4G19030.1	21798944
AT1G27700.1	KRH42923	AT4G19030.1	21798944
AT1G27700.1	KRH42926	AT4G19030.1	21798944
AT1G27700.1	KRH45251	AT4G19030.1	21798944
AT1G27700.1	KRH59035	AT4G19030.1	21798944
AT1G27700.1	KRH59036	AT4G19030.1	21798944
AT1G27700.1	KRH22653	AT5G22290.1	21798944
AT1G27700.1	KRH26664	AT5G22290.1	21798944
AT1G27700.1	KRH41254	AT5G41600.1	21798944
AT1G27700.1	KRH59988	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61384	Soybean	cytosol	66.77	65.78
KRH52070	Soybean	cytosol, nucleus, peroxisome	65.57	56.3
VIT_18s0001g09380.t01	Wine grape	nucleus	53.89	52.17
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	52.4	51.78
PGSC0003DMT400030171	Potato	nucleus	51.8	50.73
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	43.71	50.69
CDX90104	Canola	cytosol, golgi, nucleus	43.71	50.69
CDY67977	Canola	cytosol, golgi, nucleus	44.01	50.34
Solyc12g088440.1.1	Tomato	nucleus	51.5	50.29
PGSC0003DMT400055415	Potato	cytosol	52.1	50.14
AT1G27700.1	Thale cress	cytosol	43.41	48.82
CDY60275	Canola	cytosol	41.32	48.08
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	41.32	48.08
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	41.62	47.93
GSMUA_Achr6P30760_001	Banana	cytosol, golgi, nucleus	42.81	41.33
GSMUA_Achr10P...	Banana	cytosol	38.02	40.84
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	40.72	37.99
Os10t0343100-01	Rice	cytosol	41.32	37.6
EER92668	Sorghum	cytosol	40.12	37.33
Zm00001d028054_P002	Maize	cytosol	41.32	35.57
TraesCS4B01G255000.1	Wheat	cytosol	37.43	35.11
TraesCS4A01G049700.1	Wheat	cytosol, golgi, nucleus	37.13	34.83
TraesCS4D01G254800.1	Wheat	cytosol	37.13	34.83
Os03t0207200-01	Rice	cytosol	37.43	34.34
KRG90327	Soybean	cytosol	32.34	32.83
KRH02874	Soybean	cytosol	31.44	31.91
HORVU4Hr1G069400.3	Barley	plastid	38.62	29.45

Protein Annotations

Gene3D:1.20.58.90	EntrezGene:100800191	MapMan:35.2	EMBL:ACUP02010763	EnsemblPlantsGene:GLYMA_17G236900	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048193	GO:GO:0048278	UniProt:I1MXJ2	EnsemblPlants:KRH05610	ProteinID:KRH05610
ProteinID:KRH05610.1	PFAM:PF09177	PANTHER:PTHR19957	PANTHER:PTHR19957:SF118	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin-6_N	TMHMM:TMhelix	UniParc:UPI000233E51C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:39209706..39213046

Molecular Weight (calculated)

37812.0 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.631

Length

334 amino acids

Sequence
(BLAST)

001: MASSFDRWEK DPFFNAAEEV QESADRMEST YRTWLHATKD ASSMWNSDEL CRDLRTALST AKWQLEEFAR AVRSSYGKSS SEEARNRHRD FITAIEDNIM
101: KVEHSLSESV VPGGKASLPW LRLDEGEQDE LALFLSGMPA ANNRNIEDPR LSENVSASDC LKDFHVSSVW GDSKEDISHG HRRAASASAD IGFYKISVHD
201: DAQQWSSSSG SSGPIHKVPS LSGFLRSMES VSKLKWPRNG YRKLKAEDHH KETDGELLPT AGLNRGNNAR CERSKSGLDS CDESYDKQLY GWHGAIWRQL
301: QRSQYQMQYS QPVRIVVWIV VLLCFIALIA FHAM

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.