Factsheet for Os10t0343100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0226300-01
Os01t0736900-01
Os02t0265900-01
Os04t0678700-01
Os05t0526400-01
Os06t0503400-01
Os10t0496900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27700.1	Os04t0678700-01	AT1G03630.1	21798944
AT1G27700.1	Os10t0496900-02	AT1G03630.1	21798944
AT1G27700.1	Os01t0226300-01	AT5G41600.1	21798944
AT1G27700.1	Os01t0736900-01	AT5G41600.1	21798944
AT1G27700.1	Os02t0265900-01	AT5G41600.1	21798944
AT1G27700.1	Os05t0526400-01	AT5G41600.1	21798944
AT1G27700.1	Os06t0503400-01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0207200-01	Rice	cytosol	58.86	59.34
GSMUA_Achr10P...	Banana	cytosol	40.6	47.91
GSMUA_Achr4P10890_001	Banana	cytosol, golgi, nucleus	45.78	46.93
Bra030059.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	34.88	44.6
CDY60275	Canola	cytosol	34.88	44.6
CDY03940	Canola	cytosol, endoplasmic reticulum, nucleus	34.33	43.45
Bra010923.1-P	Field mustard	cytosol, golgi, nucleus	33.52	42.71
CDX90104	Canola	cytosol, golgi, nucleus	33.24	42.36
CDY67977	Canola	cytosol, golgi, nucleus	33.52	42.12
KRH05610	Soybean	nucleus	37.6	41.32
Solyc04g078130.2.1	Tomato	cytosol, golgi, nucleus	37.87	41.12
AT1G27700.1	Thale cress	cytosol	33.24	41.08
KRH61384	Soybean	cytosol	37.87	41.0
VIT_18s0001g09380.t01	Wine grape	nucleus	37.87	40.29
PGSC0003DMT400055415	Potato	cytosol	36.78	38.9
Solyc12g088440.1.1	Tomato	nucleus	36.24	38.89
PGSC0003DMT400030171	Potato	nucleus	35.97	38.71
KRH52070	Soybean	cytosol, nucleus, peroxisome	37.33	35.22
Os08t0244100-01	Rice	cytosol, golgi, nucleus	28.88	29.36
Os05t0443700-01	Rice	cytosol	9.54	10.45

Protein Annotations

Gene3D:1.20.58.90	MapMan:35.2	EntrezGene:4348362	ProteinID:ABB47250.1	EMBL:AK100724	ProteinID:BAF26301.1
ProteinID:BAT10420.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:Os10g0343100	EnsemblPlants:Os10t0343100-01	PFAM:PF09177
PANTHER:PTHR34949	PANTHER:PTHR34949:SF3	UniProt:Q339M7	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-6_N
TMHMM:TMhelix	UniParc:UPI00005E1D43	RefSeq:XP_015614350.1	SEG:seg	:	:

Description

Syntaxin 6, N-terminal domain containing protein. (Os10t0343100-01)

Coordinates

chr10:+:10170579..10174444

Molecular Weight (calculated)

40456.6 Da

IEP (calculated)

6.688

GRAVY (calculated)

-0.498

Length

367 amino acids

Sequence
(BLAST)

001: MATSFDRWEK DPFFPAAEEV QESADRMESV YRRWLQERKE VGGGAVETAA ERGGGGWGRA AGDLRRELHT ALGTAKWQLD ELQRAIKSNY SVVLAGKDTR
101: ARHDDFVSAI GHRILEVEKF LKESNTTEGR GPLSWVRLDE GEREELAHFL SAGTYQKRDE VVTITSAGDI EVGSNARRVK KGVSIDSSND SSGSAESGLV
201: STKEETAPGH RRTASAYADI GSWTITIPDE ANGIDEQSFD DLPKVPLVKS PSSSVLMNAF QSKTRMKTKN GAKKLAGADQ QDVVETLPLT NSRSCQGFDG
301: LFQRSKSCLS TSDDEDNCNK KLYGCLGAFR RLLQRSQYQV QYGRPIQLLI LAIVVLLVLI YAMKAIL

Best Arabidopsis Sequence Match ( AT1G27700.1 )
(BLAST)

001: MTTSLDRWEK DPFFPAAEEV QESADRMESA YRTWLNGKRD SSKVWDSEQL HRDLHAALGT TKWQLDEFQK AVKSSYDNRL SDETRDRHRE FTFVMEAQVS
101: KIEKSLKEAA QSDGKGTPRW VRLDEDDRNE LALFLTGPSE SAKANPNGHR RTASAAEFSA WNIAVSDDGL VKKSCDEPVV RPPRKVPSFS GFLNYMDPVS
201: KHCNRKWKGL DRQGDSDAAL LPIQANQQDM NGCSERGKSC MECEEDCYEK QLHGWYGALQ RQLQRSQYRM RYSKSVHAAI WIILLVFLIV VVAVHSM

Arabidopsis Description

At1g27700/T22C5_14 [Source:UniProtKB/TrEMBL;Acc:Q940U5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.