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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0196500-01
Os01t0226300-01
Os01t0331900-01
Os01t0604700-01
Os01t0641700-01
Os01t0736900-01
Os01t0921600-01
Os02t0117400-01
Os02t0265900-01
Os02t0565200-01
Os03t0358200-00
Os03t0819900-01
Os04t0103300-01
Os04t0105300-01
Os04t0165400-01
Os04t0446300-01
Os05t0159100-01
Os05t0200280-01
Os05t0436400-03
Os05t0461300-01
Os05t0486200-01
Os05t0526400-01
Os05t0589000-02
Os06t0503400-01
Os06t0620600-01
Os07t0239400-01
Os07t0655400-01
Os10t0518200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Os01t0331900-01 AT1G09330.1 21798944
AT4G11220.1 Os05t0159100-01 AT1G09330.1 21798944
AT4G11220.1 Os04t0165400-01 AT3G59500.1 21798944
AT4G11220.1 Os06t0620600-01 AT3G59500.1 21798944
AT5G41600.1 Os01t0196500-01 AT1G55190.1 21798944
AT5G41600.1 Os05t0200280-01 AT1G55190.1 21798944
AT5G41600.1 Os05t0486200-01 AT1G77350.1 21798944
AT5G41600.1 Os02t0117400-01 AT2G03120.1 21798944
AT5G41600.1 Os05t0436400-03 AT2G03120.1 21798944
AT5G41600.1 Os02t0565200-01 AT2G39960.1 21798944
AT5G41600.1 Os04t0446300-01 AT2G39960.1 21798944
AT5G41600.1 Os04t0105300-01 AT2G46890.1 21798944
AT5G41600.1 Os01t0604700-01 AT3G02420.1 21798944
AT5G41600.1 Os01t0641700-01 AT3G02420.1 21798944
AT5G41600.1 Os05t0589000-02 AT3G02420.1 21798944
AT5G41600.1 Os03t0358200-00 AT3G07950.1 21798944
AT5G41600.1 Os04t0103300-01 AT3G07950.1 21798944
AT5G41600.1 Os07t0655400-01 AT3G07950.1 21798944
AT5G41600.1 Os01t0921600-01 AT3G27080.1 21798944
AT5G41600.1 Os03t0819900-01 AT3G46060.1 21798944
AT5G41600.1 Os05t0461300-01 AT3G46060.1 21798944
AT5G41600.1 Os07t0239400-01 AT3G46060.1 21798944
AT5G41600.1 Os04t0165400-01 AT3G59500.1 21798944
AT5G41600.1 Os06t0620600-01 AT3G59500.1 21798944
AT5G41600.1 Os01t0226300-01 AT5G41600.1 21798944
AT5G41600.1 Os01t0736900-01 AT5G41600.1 21798944
AT5G41600.1 Os02t0265900-01 AT5G41600.1 21798944
AT5G41600.1 Os05t0526400-01 AT5G41600.1 21798944
AT5G41600.1 Os06t0503400-01 AT5G41600.1 21798944
AT5G41600.1 Os10t0518200-01 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES19841 Sorghum cytosol, nucleus, plasma membrane 88.84 87.45
Zm00001d038768_P001 Maize extracellular, mitochondrion 87.25 86.22
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 83.67 84.68
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 83.67 84.34
Os01t0736900-01 Rice plasma membrane 81.67 81.03
Zm00001d020729_P001 Maize plasma membrane 28.69 75.79
Zm00001d020229_P001 Maize plasma membrane 43.82 72.37
Os01t0226300-01 Rice plasma membrane 50.2 70.79
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 68.92 67.84
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 66.93 66.67
KRH41254 Soybean cytosol, nucleus, plasma membrane 66.53 65.75
KRH59988 Soybean mitochondrion 65.34 64.57
Solyc03g007740.2.1 Tomato nucleus 65.34 64.31
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 64.94 63.92
TraesCS1A01G346800.3 Wheat plasma membrane 64.14 63.89
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 63.74 63.74
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 63.35 63.6
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 63.74 63.24
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 64.14 63.14
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 67.33 62.59
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 62.55 62.55
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 62.55 62.55
CDY38194 Canola cytosol, nucleus, plasma membrane 62.15 62.4
Solyc01g095200.2.1 Tomato plastid 65.34 62.36
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 65.34 62.36
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 65.74 62.26
KRH40357 Soybean endoplasmic reticulum 63.74 62.26
KRH06560 Soybean endoplasmic reticulum 63.35 62.11
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 66.53 61.85
KRH00872 Soybean endoplasmic reticulum 63.74 61.78
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 61.35 61.6
AT4G23630.2 Thale cress nucleus 67.33 61.45
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 61.35 61.35
CDX79993 Canola cytosol, peroxisome, plasma membrane 61.35 61.35
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 61.75 61.26
CDY42012 Canola cytosol, peroxisome, plasma membrane 60.56 60.56
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 62.95 60.54
Bra019285.1-P Field mustard cytosol 64.54 60.45
CDY10954 Canola cytosol 64.94 60.37
CDY57657 Canola cytosol, nucleus, plasma membrane 66.14 60.36
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 61.75 60.31
KRG99174 Soybean endoplasmic reticulum, plasma membrane 20.72 59.77
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 60.56 59.61
Bra010539.1-P Field mustard cytosol 63.74 59.48
Bra013717.1-P Field mustard nucleus 65.34 59.42
CDY44123 Canola cytosol, nucleus, plasma membrane 65.34 59.42
Bra000739.1-P Field mustard cytosol 62.95 59.18
CDY24806 Canola cytosol 64.54 59.12
CDY52012 Canola cytosol, peroxisome, plasma membrane 59.76 59.06
CDX90792 Canola cytosol, peroxisome, plasma membrane 62.55 58.8
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 63.35 58.67
VIT_02s0025g00590.t01 Wine grape mitochondrion 13.94 58.33
CDY53913 Canola cytosol, peroxisome, plasma membrane 58.96 58.27
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 58.96 58.27
CDY41666 Canola cytosol 63.74 57.97
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 58.17 57.71
AT4G11220.1 Thale cress nucleus 60.96 56.46
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 51.39 56.09
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 56.57 55.91
KRH35223 Soybean cytosol, nucleus, plasma membrane 54.58 54.8
CDY13240 Canola cytosol, peroxisome, plasma membrane 34.26 53.42
KRH48008 Soybean cytosol, peroxisome, plasma membrane 64.94 51.91
Os05t0312500-01 Rice plasma membrane 51.79 51.79
CDY05135 Canola mitochondrion 61.75 49.52
AT4G01230.2 Thale cress cytosol 47.81 49.18
Os06t0503400-01 Rice plasma membrane 51.79 49.06
CDY48510 Canola cytosol 45.02 46.5
Bra037369.1-P Field mustard cytosol 45.02 46.5
CDY07184 Canola cytosol, peroxisome, plasma membrane 45.02 46.5
Os03t0781700-01 Rice cytosol, peroxisome, plasma membrane 43.82 44.53
CDY62522 Canola cytosol 13.94 43.75
Os07t0142000-01 Rice plasma membrane 39.04 39.84
KRG91601 Soybean mitochondrion 53.78 39.71
Os01t0691400-00 Rice cytosol, peroxisome 35.86 38.96
Bra035242.1-P Field mustard cytosol 30.28 38.0
Os01t0139000-00 Rice plasma membrane 31.87 37.56
CDX86802 Canola cytosol, nucleus, peroxisome 35.06 35.92
Os04t0670000-01 Rice plasma membrane 28.29 35.68
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 24.3 33.89
Os04t0367400-02 Rice plasma membrane 26.29 30.99
CDX89122 Canola extracellular, mitochondrion 18.73 30.72
Os01t0851300-01 Rice golgi, plasma membrane, vacuole 23.9 29.56
Os03t0336600-02 Rice plasma membrane 26.69 29.0
Protein Annotations
MapMan:13.7.2.1EntrezGene:4339382ProteinID:AAU44062.1EMBL:AK104245EMBL:AK121753ProteinID:BAF18016.1
ProteinID:BAS94991.1ProteinID:EEE64429.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388EnsemblPlantsGene:Os05g0526400
EnsemblPlants:Os05t0526400-01PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF99UniProt:Q65X89
InterPro:ReticulonTMHMM:TMhelixUniParc:UPI000043F474RefSeq:XP_015637439.1SEG:seg:
Description
Reticulon family protein. (Os05t0526400-01)
Coordinates
chr5:-:26180148..26182311
Molecular Weight (calculated)
28259.7 Da
IEP (calculated)
8.457
GRAVY (calculated)
0.095
Length
251 amino acids
Sequence
(BLAST)
001: MAEHKEEESL VESVMDKISD KLHGRGGSSS SSSDSDGERT ADLKAKIYRL FGREKPVHSV LGGGKPADLF LWRNKKISVG VLAGATAIWL LFEVMDYHLL
101: TLLCHCIILT LAMLFLWSNA STFINKSPPN IPEVKIPEDL AVNVARSLRF EINRGFATLR EIGQGHDLKK FLIVVVGLWV LSVLGSCCNF LTLFYIVFMV
201: LYTVPVLYEK YEDQIDAFGE KAMIELKKYY AIFDEKCLSK IPKGPLKNKK H
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.