Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g007740.2.1 | Tomato | nucleus | 96.47 | 96.47 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 80.39 | 81.03 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 69.02 | 66.42 |
| Os01t0226300-01 | Rice | plasma membrane | 46.27 | 66.29 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 66.27 | 66.27 |
| Os01t0736900-01 | Rice | plasma membrane | 65.49 | 66.01 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 66.67 | 65.89 |
| Zm00001d043551_P003 | Maize | plasma membrane | 66.27 | 65.76 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 64.31 | 65.34 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 65.88 | 65.12 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 63.92 | 64.94 |
| Os05t0526400-01 | Rice | plasma membrane | 63.92 | 64.94 |
| Zm00001d012776_P001 | Maize | extracellular | 63.92 | 64.43 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 55.29 | 64.38 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 63.53 | 63.53 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 63.53 | 63.53 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 62.75 | 63.49 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 62.75 | 63.24 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 66.67 | 62.96 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 62.35 | 62.6 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 61.96 | 62.45 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 61.96 | 62.2 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 60.39 | 62.1 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 60.39 | 62.1 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 61.18 | 61.9 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 60.39 | 61.85 |
| TraesCS3A01G278800.1 | Wheat | golgi | 60.0 | 61.69 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 56.86 | 58.0 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 56.47 | 57.6 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 62.35 | 56.99 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 62.35 | 55.99 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 62.75 | 55.94 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 62.35 | 55.59 |
| Zm00001d020229_P001 | Maize | plasma membrane | 32.55 | 54.61 |
| Zm00001d016041_P001 | Maize | extracellular | 48.24 | 53.48 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 47.84 | 53.04 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 63.53 | 52.94 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 47.45 | 52.16 |
| Zm00001d020729_P001 | Maize | plasma membrane | 19.22 | 51.58 |
| EER89811 | Sorghum | peroxisome | 51.37 | 51.17 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 62.75 | 50.96 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 50.2 | 50.79 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.98 | 50.0 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.98 | 50.0 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.98 | 50.0 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 50.98 | 49.81 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 62.75 | 49.69 |
| Os06t0503400-01 | Rice | plasma membrane | 50.98 | 49.06 |
| PGSC0003DMT400016142 | Potato | endoplasmic reticulum, golgi, peroxisome | 45.1 | 47.13 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 48.24 | 47.13 |
| HORVU7Hr1G081290.4 | Barley | plastid | 40.78 | 45.02 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 51.37 | 43.67 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 25.1 | 42.67 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 15.29 | 41.49 |
| KRG91601 | Soybean | mitochondrion | 55.29 | 41.47 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 41.18 | 41.34 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 32.94 | 40.19 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 22.35 | 37.01 |
| PGSC0003DMT400066222 | Potato | plasma membrane | 28.63 | 35.78 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 41.18 | 35.0 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 31.37 | 33.61 |
| PGSC0003DMT400026113 | Potato | plasma membrane, plastid | 20.39 | 21.31 |
Protein Annotations
| MapMan:13.7.2.1 | ProteinID:ABC01908 | ProteinID:ABC01908.1 | ncoils:Coil | EMBL:DQ294276 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR003388 | UniProt:M1BRN6 | PFAM:PF02453 | EnsemblPlantsGene:PGSC0003DMG400019959 | PGSC:PGSC0003DMG400019959 |
| EnsemblPlants:PGSC0003DMT400051387 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | TMHMM:TMhelix |
| UniParc:UPI0002958D6E | SEG:seg | : | : | : | : |
Description
24 kDa seed maturation protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019959]
Coordinates
chr3:-:49332383..49335035
Molecular Weight (calculated)
28659.1 Da
IEP (calculated)
6.722
GRAVY (calculated)
0.224
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHAGEHES VVESVMEKIN DKLHDHDSSS SDSEDDKEKI SSVDAVKAKI YRLFGRERPV HKVLGGGKPA DIFLWRDKKI TAGVLGFATS LWVLFELLQY
101: HLLTLVCHIL ILALAVLFLW SNASTFINKS PPQIPDVILP EDIVLGVAAA LRIEINKALE IFRDIASGKE LKKFLAVIAG LWVLSILGNC WNFLTLFYIC
201: FVLLHTVPVL YEKFEDQVDA FAENAEAEIK KQYAVFNVKV LSKIPRGPLK DKKFL
101: HLLTLVCHIL ILALAVLFLW SNASTFINKS PPQIPDVILP EDIVLGVAAA LRIEINKALE IFRDIASGKE LKKFLAVIAG LWVLSILGNC WNFLTLFYIC
201: FVLLHTVPVL YEKFEDQVDA FAENAEAEIK KQYAVFNVKV LSKIPRGPLK DKKFL
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.