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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 97.65 94.68
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 78.43 75.47
KRH40357 Soybean endoplasmic reticulum 69.41 68.87
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 67.06 68.13
KRH00872 Soybean endoplasmic reticulum 69.02 67.95
KRH06560 Soybean endoplasmic reticulum 67.45 67.19
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 65.88 66.93
Os01t0226300-01 Rice plasma membrane 46.67 66.85
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 66.27 66.27
CDY52012 Canola cytosol, peroxisome, plasma membrane 65.1 65.35
CDY53913 Canola cytosol, peroxisome, plasma membrane 64.71 64.96
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 64.71 64.96
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 64.31 64.82
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 64.31 64.82
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 68.63 64.81
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 65.49 64.73
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 64.71 64.71
CDX79993 Canola cytosol, peroxisome, plasma membrane 63.53 64.54
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 63.53 64.54
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 63.53 64.29
Os05t0526400-01 Rice plasma membrane 63.14 64.14
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 62.35 64.11
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 62.35 63.86
CDY42012 Canola cytosol, peroxisome, plasma membrane 62.75 63.74
Os01t0736900-01 Rice plasma membrane 63.14 63.64
EES19841 Sorghum cytosol, nucleus, plasma membrane 63.53 63.53
Zm00001d043551_P003 Maize plasma membrane 63.92 63.42
Zm00001d012776_P001 Maize extracellular 62.35 62.85
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 61.96 62.7
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 60.78 62.5
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 61.96 62.45
KXG33320 Sorghum cytosol, nucleus, plasma membrane 63.14 62.4
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 62.35 62.35
TraesCS3A01G278800.1 Wheat golgi 60.39 62.1
GSMUA_Achr4P08400_001 Banana cytosol 61.57 62.06
Zm00001d038768_P001 Maize extracellular, mitochondrion 61.57 61.81
GSMUA_Achr3P31920_001 Banana cytosol 52.55 61.19
KRG99174 Soybean endoplasmic reticulum, plasma membrane 20.78 60.92
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 58.43 59.6
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 63.14 57.71
KXG31516 Sorghum cytosol, nucleus, plasma membrane 63.92 57.39
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 64.31 57.34
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 63.92 56.99
KRH48008 Soybean cytosol, peroxisome, plasma membrane 68.63 55.73
Zm00001d020729_P001 Maize plasma membrane 20.39 54.74
Zm00001d020229_P001 Maize plasma membrane 32.55 54.61
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 49.02 54.35
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 65.1 54.25
Zm00001d016041_P001 Maize extracellular 48.24 53.48
VIT_02s0025g00590.t01 Wine grape mitochondrion 12.55 53.33
HORVU3Hr1G030760.2 Barley mitochondrion 63.53 51.59
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 46.67 51.29
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 64.31 50.93
TraesCS1A01G346800.3 Wheat plasma membrane 50.2 50.79
EER89811 Sorghum peroxisome 50.98 50.78
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 50.59 49.43
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 49.41 48.28
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.02 48.08
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.02 48.08
AT4G01230.2 Thale cress cytosol 45.88 47.95
Os06t0503400-01 Rice plasma membrane 49.8 47.92
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 48.63 47.69
CDY07184 Canola cytosol, peroxisome, plasma membrane 44.71 46.91
CDY48510 Canola cytosol 44.71 46.91
Bra037369.1-P Field mustard cytosol 44.71 46.91
PGSC0003DMT400016142 Potato endoplasmic reticulum, golgi, peroxisome 43.53 45.49
PGSC0003DMT400002449 Potato cytosol, nucleus, plasma membrane 42.75 42.91
GSMUA_Achr3P15760_001 Banana cytosol 24.71 42.0
HORVU7Hr1G081290.4 Barley plastid 38.04 41.99
HORVU7Hr1G075700.2 Barley mitochondrion 48.63 41.33
PGSC0003DMT400052428 Potato cytosol, plasma membrane, vacuole 32.55 39.71
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 23.14 38.31
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 13.33 36.17
PGSC0003DMT400074138 Potato plasma membrane 41.96 35.67
CDX89122 Canola extracellular, mitochondrion 21.18 35.29
PGSC0003DMT400066222 Potato plasma membrane 27.45 34.31
PGSC0003DMT400042905 Potato cytosol, peroxisome, plasma membrane 31.37 33.61
PGSC0003DMT400026113 Potato plasma membrane, plastid 24.71 25.82
Protein Annotations
EnsemblPlants:PGSC0003DMT400049928EnsemblPlantsGene:PGSC0003DMG400019405EntrezGene:102596812GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF70PFAM:PF02453PFscan:PS50845PGSC:PGSC0003DMG400019405
RefSeq:XP_006358652.1TMHMM:TMhelixUniParc:UPI00029515E8UniProt:M1BPK3MapMan:13.7.2.1:
Description
24 kDa seed maturation protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019405]
Coordinates
chr10:-:6238995..6241590
Molecular Weight (calculated)
28668.3 Da
IEP (calculated)
8.465
GRAVY (calculated)
0.160
Length
255 amino acids
Sequence
(BLAST)
001: MAEQVEHSEH KEESLMEKIA DKIHFDRSSS SDSEVKPAAA PEASSVKAKI WRLFGREKPV HHVFGGGKPA DVFLWRNKKI SASVLGGATA IWVLFELLEY
101: FLVGLVCHLL IFTLAVLFLW SNATTFINKK RPHIPEVQLP EEPILEIASA LSIEINRALS MLREIATGKD LKKFLAVVAG LWILSVVGNC CNFLTLFYIL
201: FVLLHTVPVL YEKYEDKVDP LAEKAMQEIK KQYAVFDARV LSKIPIGPLK DKKNA
Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.