Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 98.8 | 99.19 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 86.75 | 84.71 |
| Os05t0526400-01 | Rice | plasma membrane | 84.34 | 83.67 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 85.14 | 83.46 |
| Zm00001d020729_P001 | Maize | plasma membrane | 29.32 | 76.84 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 76.71 | 75.49 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 73.9 | 73.02 |
| Zm00001d020229_P001 | Maize | plasma membrane | 43.78 | 71.71 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 71.89 | 68.58 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 66.27 | 65.48 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 66.67 | 65.1 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 65.06 | 63.78 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.26 | 63.74 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.45 | 63.2 |
| KRH59988 | Soybean | mitochondrion | 63.86 | 62.6 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 63.05 | 62.55 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.05 | 62.55 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 62.65 | 62.4 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 63.86 | 62.35 |
| Solyc03g007740.2.1 | Tomato | nucleus | 63.45 | 61.96 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 65.86 | 61.89 |
| KRH40357 | Soybean | endoplasmic reticulum | 63.86 | 61.87 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 61.85 | 61.6 |
| Solyc01g095200.2.1 | Tomato | plastid | 65.06 | 61.6 |
| KRH00872 | Soybean | endoplasmic reticulum | 63.86 | 61.39 |
| KRH06560 | Soybean | endoplasmic reticulum | 63.05 | 61.33 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 62.25 | 61.26 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 62.25 | 61.26 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 64.66 | 61.22 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 61.85 | 60.39 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 65.46 | 60.37 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 62.25 | 60.31 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 60.64 | 60.16 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 60.64 | 60.16 |
| AT4G23630.2 | Thale cress | nucleus | 66.27 | 60.0 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 64.66 | 59.63 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 61.04 | 59.61 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 63.86 | 59.55 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 59.84 | 59.36 |
| Bra000739.1-P | Field mustard | cytosol | 63.45 | 59.18 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 20.48 | 58.62 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 67.07 | 58.39 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 14.06 | 58.33 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 59.04 | 57.87 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 62.65 | 57.56 |
| Bra019285.1-P | Field mustard | cytosol | 61.85 | 57.46 |
| CDY10954 | Canola | cytosol | 62.25 | 57.41 |
| CDY24806 | Canola | cytosol | 63.05 | 57.3 |
| Bra010539.1-P | Field mustard | cytosol | 61.85 | 57.25 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 58.23 | 57.09 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 58.23 | 57.09 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 63.05 | 56.88 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 62.65 | 56.73 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 57.43 | 56.52 |
| CDY41666 | Canola | cytosol | 62.25 | 56.16 |
| Bra013717.1-P | Field mustard | nucleus | 62.25 | 56.16 |
| AT4G11220.1 | Thale cress | nucleus | 61.04 | 56.09 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 55.82 | 54.72 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 53.01 | 52.8 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 34.14 | 52.8 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 65.46 | 51.91 |
| TraesCS1B01G099200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 50.6 | 50.4 |
| CDY05135 | Canola | mitochondrion | 62.65 | 49.84 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 49.8 | 47.69 |
| CDY62522 | Canola | cytosol | 15.26 | 47.5 |
| AT4G01230.2 | Thale cress | cytosol | 45.38 | 46.31 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 44.18 | 45.27 |
| Bra037369.1-P | Field mustard | cytosol | 44.18 | 45.27 |
| CDY48510 | Canola | cytosol | 44.18 | 45.27 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 37.75 | 40.17 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 38.96 | 39.27 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 40.56 | 39.0 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 34.14 | 38.81 |
| KRG91601 | Soybean | mitochondrion | 51.41 | 37.65 |
| Bra035242.1-P | Field mustard | cytosol | 29.32 | 36.5 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 34.54 | 36.29 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 34.94 | 35.51 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 24.1 | 33.33 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 25.7 | 32.16 |
| CDX89122 | Canola | extracellular, mitochondrion | 19.28 | 31.37 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 28.11 | 30.84 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G360800.1 | EnsemblPlantsGene:TraesCS1B01G360800 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF99 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr1B:-:589134019..589135566
Molecular Weight (calculated)
27896.1 Da
IEP (calculated)
9.275
GRAVY (calculated)
0.021
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHKEESVM DKITEKFHGG SSSSSSSDDD ERKSGSSSSV KAKIYRLFGR EKPVHSVLGG GKPADLFLWR NKKISGGVLA GATAIWLLFE VLEYHLLTLL
101: CHGFILTLGI LFLWSNASAF VNKCPPNIPE VKIPEDLAVN VARSLRYEIN RGFASLRAIG QGRDLKKFLI VVAGLWILSF LGSCCNFLTL FYIVFMVLYT
201: VPVLYEKYED KIDAFGEKAM VELKKYYAIF DEKCLSKIPK GPSKDKKQH
101: CHGFILTLGI LFLWSNASAF VNKCPPNIPE VKIPEDLAVN VARSLRYEIN RGFASLRAIG QGRDLKKFLI VVAGLWILSF LGSCCNFLTL FYIVFMVLYT
201: VPVLYEKYED KIDAFGEKAM VELKKYYAIF DEKCLSKIPK GPSKDKKQH
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.