Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G467700.1 | Wheat | golgi | 98.09 | 98.09 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 96.65 | 96.19 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 75.12 | 77.72 |
| EES01977 | Sorghum | cytosol | 65.55 | 67.49 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 65.07 | 67.0 |
| Zm00001d012017_P002 | Maize | mitochondrion | 63.16 | 65.35 |
| VIT_14s0068g02030.t01 | Wine grape | cytosol | 53.11 | 55.22 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.11 | 55.22 |
| GSMUA_Achr8P09300_001 | Banana | cytosol | 51.67 | 53.73 |
| Solyc02g068130.2.1 | Tomato | plastid | 50.72 | 51.96 |
| AT5G40930.1 | Thale cress | cytosol | 45.93 | 51.34 |
| KRG94268 | Soybean | nucleus | 50.24 | 50.24 |
| PGSC0003DMT400052223 | Potato | cytosol | 48.8 | 49.76 |
| GSMUA_Achr8P00740_001 | Banana | cytosol | 40.19 | 49.12 |
| KRH57705 | Soybean | nucleus | 48.8 | 48.57 |
| Solyc02g094140.2.1 | Tomato | cytosol | 47.37 | 48.53 |
| KRH31475 | Soybean | mitochondrion | 45.45 | 47.26 |
| HORVU3Hr1G094550.2 | Barley | plastid | 50.24 | 46.88 |
| PGSC0003DMT400056939 | Potato | cytosol | 36.84 | 45.56 |
| PGSC0003DMT400056935 | Potato | cytosol | 41.15 | 44.79 |
| KRG97423 | Soybean | cytosol | 45.93 | 44.24 |
| AT1G27390.1 | Thale cress | cytosol | 44.02 | 43.81 |
| CDY34181 | Canola | cytosol | 41.63 | 43.72 |
| Bra032980.1-P | Field mustard | cytosol | 41.63 | 43.72 |
| CDY28496 | Canola | cytosol | 41.15 | 42.57 |
| CDY27615 | Canola | cytosol | 43.06 | 42.45 |
| Bra032826.1-P | Field mustard | cytosol | 43.06 | 42.45 |
| CDX84923 | Canola | cytosol | 42.11 | 42.31 |
| CDY03918 | Canola | cytosol | 41.63 | 41.83 |
| AT3G27080.1 | Thale cress | cytosol | 40.19 | 41.58 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 14.35 | 39.47 |
| CDY15710 | Canola | cytosol | 39.23 | 38.68 |
| CDY11814 | Canola | cytosol | 38.28 | 38.46 |
| Bra030044.1-P | Field mustard | cytosol | 39.23 | 38.14 |
| CDX90082 | Canola | cytosol | 37.32 | 37.5 |
| Bra010946.1-P | Field mustard | cytosol | 36.84 | 36.84 |
| CDY35747 | Canola | cytosol | 18.18 | 29.69 |
| AT3G27070.2 | Thale cress | plasma membrane | 32.54 | 27.42 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0045040 | InterPro:IPR011990 |
| PFAM:PD102047 | PFAM:PF06552 | PANTHER:PTHR32409 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TOM20_imprt_rcpt |
| InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS3D01G425100 | EnsemblPlants:TraesCS3D01G425100.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3D:+:537146749..537150589
Molecular Weight (calculated)
23212.3 Da
IEP (calculated)
4.940
GRAVY (calculated)
-0.529
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMAAMNDPE RLFFFDLACK TAKSTYDENP LDADNLTRWG GALLELSQMH NGPESLKCLE DAESKLDEAL RIDPNKADAL WCLGNALTSR GFFTSETVQA
101: NECFEKATGC FQRAVDVEPA NELYRKSLDL SSKAPELHME IHRQIASQAS QGAPSSSNAR QTRKKKKNND FWYDLAGWGI LLIGIGVWLG VANSQAKEAQ
201: PPHMSQPNM
101: NECFEKATGC FQRAVDVEPA NELYRKSLDL SSKAPELHME IHRQIASQAS QGAPSSSNAR QTRKKKKNND FWYDLAGWGI LLIGIGVWLG VANSQAKEAQ
201: PPHMSQPNM
001: MDMQNENERL MVFEHARKVA EATYVKNPLD AENLTRWAGA LLELSQFQTE PKQMILEAIL KLGEALVIDP KKHDALWLIG NAHLSFGFLS SDQTEASDNF
101: EKASQFFQLA VEEQPESELY RKSLTLASKA PELHTGGTAG PSSNSAKTMK QKKTSEFKYD VFGWVILASY VVAWISFANS QTPVSRQ
101: EKASQFFQLA VEEQPESELY RKSLTLASKA PELHTGGTAG PSSNSAKTMK QKKTSEFKYD VFGWVILASY VVAWISFANS QTPVSRQ
Arabidopsis Description
TOM20-4Mitochondrial import receptor subunit TOM20-4 [Source:UniProtKB/Swiss-Prot;Acc:P82805]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.