Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27615 | Canola | cytosol | 73.33 | 72.64 |
| Bra032826.1-P | Field mustard | cytosol | 73.33 | 72.64 |
| CDX84923 | Canola | cytosol | 70.95 | 71.63 |
| CDX90082 | Canola | cytosol | 63.33 | 63.94 |
| CDY11814 | Canola | cytosol | 63.33 | 63.94 |
| CDY15710 | Canola | cytosol | 64.29 | 63.68 |
| CDY03918 | Canola | cytosol | 62.86 | 63.46 |
| Bra030044.1-P | Field mustard | cytosol | 64.29 | 62.79 |
| Bra010946.1-P | Field mustard | cytosol | 62.38 | 62.68 |
| KRH31475 | Soybean | mitochondrion | 51.9 | 54.23 |
| Solyc02g068130.2.1 | Tomato | plastid | 52.38 | 53.92 |
| PGSC0003DMT400052223 | Potato | cytosol | 50.95 | 52.2 |
| KRG97423 | Soybean | cytosol | 52.38 | 50.69 |
| Zm00001d012017_P002 | Maize | mitochondrion | 48.57 | 50.49 |
| Solyc02g094140.2.1 | Tomato | cytosol | 49.05 | 50.49 |
| EES01977 | Sorghum | cytosol | 48.1 | 49.75 |
| Zm00001d042329_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 47.62 | 49.26 |
| AT5G40930.1 | Thale cress | cytosol | 42.86 | 48.13 |
| Os01t0921600-01 | Rice | mitochondrion, plastid | 44.29 | 46.04 |
| PGSC0003DMT400056939 | Potato | cytosol | 36.67 | 45.56 |
| TraesCS3A01G429800.1 | Wheat | cytosol | 44.76 | 44.76 |
| AT3G27080.1 | Thale cress | cytosol | 42.86 | 44.55 |
| PGSC0003DMT400056935 | Potato | cytosol | 40.48 | 44.27 |
| TraesCS3B01G467700.1 | Wheat | golgi | 43.81 | 44.02 |
| TraesCS3D01G425100.1 | Wheat | cytosol | 43.81 | 44.02 |
| GSMUA_Achr8P00730_001 | Banana | plasma membrane, vacuole | 14.29 | 39.47 |
| Zm00001d040209_P001 | Maize | cytosol | 28.57 | 36.81 |
| AT3G27070.2 | Thale cress | plasma membrane | 31.43 | 26.61 |
| HORVU3Hr1G094550.2 | Barley | plastid | 24.76 | 23.21 |
| HORVU7Hr1G075380.6 | Barley | cytosol, plastid | 16.19 | 20.73 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:23.2.1.5 | EntrezGene:839629 | UniProt:A0A178W7F2 | ProteinID:AAF99745.1 | ProteinID:AEE30824.1 |
| EMBL:AJ296024 | EMBL:AK228213 | ArrayExpress:AT1G27390 | EnsemblPlantsGene:AT1G27390 | RefSeq:AT1G27390 | TAIR:AT1G27390 |
| RefSeq:AT1G27390-TAIR-G | EnsemblPlants:AT1G27390.1 | TAIR:AT1G27390.1 | Unigene:At.10325 | EMBL:BT024602 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 | GO:GO:0005742 | GO:GO:0005743 | GO:GO:0005744 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006626 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0015450 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0022626 |
| GO:GO:0045040 | GO:GO:0046872 | GO:GO:0071806 | InterPro:IPR011990 | RefSeq:NP_174059.2 | ProteinID:OAP13303.1 |
| UniProt:P82873 | PFAM:PD102047 | PFAM:PF06552 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR32409 | SUPFAM:SSF48452 |
| TMHMM:TMhelix | Symbol:TOM20-2 | InterPro:TOM20_imprt_rcpt | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0000196EC5 | SEG:seg |
Description
TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
Coordinates
chr1:-:9513081..9515050
Molecular Weight (calculated)
23171.4 Da
IEP (calculated)
5.617
GRAVY (calculated)
-0.525
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.